# Define the split functionsplit_fun <- drop_split_levelslyt <-basic_table() %>%summarize_patients_events_in_cols(filters_list = filters_list,empty_stats =c("all", "related", "fatal", "fatal_related"),custom_label ="Total number of patients with at least one serious adverse event" ) %>%split_rows_by("AEBODSYS",nested =FALSE,split_fun = split_fun,indent_mod =-1L,label_pos ="topleft",split_label =obj_label(adae_serious_arm$AEBODSYS) ) %>%split_rows_by("AEDECOD",split_fun = split_fun,label_pos ="topleft",split_label =obj_label(adae_serious_arm$AEDECOD) ) %>%summarize_patients_events_in_cols(filters_list = filters_list,col_split =FALSE )result <-build_table(lyt, adae_serious_arm)result
Body System or Organ Class
Dictionary-Derived Term Patients (All) Events (All) Events (Related) Events (Fatal) Events (Fatal & Related)
---------------------------------------------------------------------------------------------------------------------------------------------------------------
Total number of patients with at least one serious adverse event 104
cl A.1
dcd A.1.1.1.2 48 68 0 0 0
cl B.1
dcd B.1.1.1.1 47 56 56 56 56
cl B.2
dcd B.2.2.3.1 48 64 0 0 0
cl D.1
dcd D.1.1.1.1 50 61 61 61 61
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# In progress
Timestamp
Code
Sys.time()
[1] "2024-05-08 17:46:35 UTC"
Session Info
Code
sessionInfo()
R version 4.4.0 (2024-04-24)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 22.04.4 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so; LAPACK version 3.10.0
locale:
[1] C
time zone: Etc/UTC
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] dplyr_1.1.4 scda.2022_0.1.5 scda_0.1.6 tern_0.9.4
[5] rtables_0.6.7 magrittr_2.0.3 formatters_0.5.6
loaded via a namespace (and not attached):
[1] Matrix_1.7-0 gtable_0.3.5 jsonlite_1.8.8 compiler_4.4.0
[5] brio_1.1.5 tidyselect_1.2.1 tidyr_1.3.1 splines_4.4.0
[9] scales_1.3.0 yaml_2.3.8 fastmap_1.1.1 lattice_0.22-6
[13] ggplot2_3.5.1 R6_2.5.1 generics_0.1.3 knitr_1.46
[17] forcats_1.0.0 rbibutils_2.2.16 htmlwidgets_1.6.4 backports_1.4.1
[21] checkmate_2.3.1 tibble_3.2.1 munsell_0.5.1 pillar_1.9.0
[25] rlang_1.1.3 utf8_1.2.4 testthat_3.2.1.1 stringi_1.8.4
[29] broom_1.0.5 xfun_0.43 cli_3.6.2 Rdpack_2.6
[33] digest_0.6.35 grid_4.4.0 lifecycle_1.0.4 vctrs_0.6.5
[37] evaluate_0.23 glue_1.7.0 codetools_0.2-20 survival_3.6-4
[41] fansi_1.0.6 colorspace_2.1-0 purrr_1.0.2 rmarkdown_2.26
[45] tools_4.4.0 pkgconfig_2.0.3 htmltools_0.5.8.1
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