TLG Catalog - Stable
  • Stable
    • Dev
  1. Listings
  2. Concomitant Medications
  3. CML01
  • Introduction

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      • EXT01
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      • LBT01
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      • LBT06
      • LBT07
      • LBT08
      • LBT09
      • LBT10
      • LBT10_BL
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      • LBT11_BL
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      • LBT12_BL
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      • LBT14
      • LBT15
    • Medical History
      • MHT01
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      • PKCT01
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  • Listings
    • ADA
      • ADAL02
    • Adverse Events
      • AEL01
      • AEL01_NOLLT
      • AEL02
      • AEL02_ED
      • AEL03
      • AEL04
    • Concomitant Medications
      • CML01
      • CML02A_GL
      • CML02B_GL
    • Development Safety Update Report
      • DSUR4
    • Disposition
      • DSL01
      • DSL02
    • ECG
      • EGL01
    • Efficacy
      • ONCL01
    • Exposure
      • EXL01
    • Lab Results
      • LBL01
      • LBL01_RLS
      • LBL02A
      • LBL02A_RLS
      • LBL02B
    • Medical History
      • MHL01
    • Pharmacokinetic
      • ADAL01
      • PKCL01
      • PKCL02
      • PKPL01
      • PKPL02
      • PKPL04
    • Vital Signs
      • VSL01
  • Graphs
    • Efficacy
      • FSTG01
      • FSTG02
      • KMG01
      • MMRMG01
      • MMRMG02
    • Other
      • BRG01
      • BWG01
      • CIG01
      • IPPG01
      • LTG01
      • MNG01
    • Pharmacokinetic
      • PKCG01
      • PKCG02
      • PKCG03
      • PKPG01
      • PKPG02
      • PKPG03
      • PKPG04
      • PKPG06

  • Appendix
    • Reproducibility

  • Index

On this page

  • Output
  • Reproducibility
    • Timestamp
    • Session Info
    • .lock file
  • Edit this page
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  1. Listings
  2. Concomitant Medications
  3. CML01

CML01

Listing of Previous and Concomitant Medications


Output

  • Standard Listing
  • Data Setup
  • Preview
  • Try this using WebR
Code
lsting <- as_listing(
  out,
  key_cols = c("TRT01A", "ID", "AGSXRC", "CMDECOD"),
  disp_cols = names(out),
  main_title = "Listing of Previous and Concomitant Medications"
)

head(lsting, 20)
Listing of Previous and Concomitant Medications

———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————
                                                                                   Date of First                                                    Ongoing                                                        
                                                                                     Study Drug     Medication               Duration               at Final                                                       
Treatment   Center/Patient ID            Age/Sex/Race            Medication Name   Administration   Start Date   Study Day    (days)    Previous?   Contact?   Dose   Dose Unit       Frequency           Route    
———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————
A: Drug X     BRA-1/id-134                47/M/WHITE              medname A_2/3      04NOV2020      21SEP2021       321        -148        No          No       30    mg/breath          Q4H          INTRAMUSCULAR
                                                                                     04NOV2020      02DEC2021       393        -42         No          No       41     umol/L           TWICE            UNKNOWN   
                                                                  medname B_1/4      04NOV2020      15APR2021       162        -172        No          No       25    ug/kg/day          Q4H           INTRAVENOUS 
                                                                                     04NOV2020      15APR2021       162        -172        No          No       25    ug/kg/day          Q4H           INTRAVENOUS 
                                                                                     04NOV2020      15APR2021       162        -172        No          No       25    ug/kg/day          Q4H           INTRAVENOUS 
                                                                  medname C_1/2      04NOV2020      19MAY2021       196        -165        No          No       22      ug/mL            TID             INHALED   
                                                                                     04NOV2020      19MAY2021       196        -165        No          No       22      ug/mL            TID             INHALED   
               BRA-1/id-42      36/M/BLACK OR AFRICAN AMERICAN    medname A_2/3      01JAN2020      09JUN2020       160        -258        No         Yes       48      DROP             QD            INTRAVENOUS 
                                                                                     01JAN2020      04APR2021       459        -194        No         Yes       57    ug/kg/day          Q4W              NASAL    
                                                                                     01JAN2020      15APR2021       470        -130        No         Yes       83    ug/kg/day          Q4H             UNKNOWN   
                                                                                     01JAN2020      20APR2021       475        -112        No         Yes       17    ug/kg/day          Q4H          SUBCUTANEOUS 
                                                                  medname A_3/3      01JAN2020      03OCT2021       641        -14         No         Yes       68        %       4 TIMES PER MONTH      UNKNOWN   
                                                                                     01JAN2020      03OCT2021       641        -14         No         Yes       68        %       4 TIMES PER MONTH      UNKNOWN   
                                                                  medname B_1/4      01JAN2020      19OCT2020       292        -49         No         Yes       5       ug/mL           TWICE            UNKNOWN   
                                                                                     01JAN2020      19OCT2020       292        -49         No         Yes       5       ug/mL           TWICE            UNKNOWN   
                                                                                     01JAN2020      19OCT2020       292        -49         No         Yes       5       ug/mL           TWICE            UNKNOWN   
                                                                  medname B_2/4      01JAN2020      11MAY2021       496        -161        No         Yes       83      ug/mL           TWICE            RECTAL    
                                                                                     01JAN2020      11MAY2021       496        -161        No         Yes       83      ug/mL           TWICE            RECTAL    
                                                                                     01JAN2020      11MAY2021       496        -161        No         Yes       83      ug/mL           TWICE            RECTAL    
                                                                  medname B_3/4      01JAN2020      09FEB2020       39         -505        No         Yes       85       ug              QD           SUBCUTANEOUS 
Experimental use!

WebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.

Code
library(dplyr)
library(rlistings)

adcm <- random.cdisc.data::cadcm

out <- adcm %>%
  filter(!is.na(CMDECOD)) %>%
  mutate(
    ID = paste(SITEID, SUBJID, sep = "/"),
    AGSXRC = paste(AGE, SEX, RACE, sep = "/"),
    TRTSD = toupper(format(as.Date(TRTSDTM), "%d%b%Y")),
    CMASTD = toupper(format(as.Date(ASTDTM), "%d%b%Y")),
    CMSTRFL = ifelse(ASTDY < 0, "Yes", "No"),
    CMENRFL = ifelse(CMENRTPT == "ONGOING", "Yes", "No")
  ) %>%
  select(
    ID, AGSXRC, TRT01A, CMDECOD, TRTSD, CMASTD, ASTDY, ADURN,
    CMSTRFL, CMENRFL, CMDOSE, CMDOSU, CMDOSFRQ, CMROUTE
  )

var_labels(out) <- c(
  ID = "Center/Patient ID",
  AGSXRC = "Age/Sex/Race",
  TRT01A = "Treatment",
  CMDECOD = "Medication Name",
  TRTSD = "Date of First\nStudy Drug\nAdministration",
  CMASTD = "Medication\nStart Date",
  ASTDY = "Study Day",
  ADURN = "Duration\n(days)",
  CMSTRFL = "Previous?",
  CMENRFL = "Ongoing\nat Final\nContact?",
  CMDOSE = "Dose",
  CMDOSU = "Dose Unit",
  CMDOSFRQ = "Frequency",
  CMROUTE = "Route"
)

Reproducibility

Timestamp

[1] "2025-07-05 17:30:37 UTC"

Session Info

─ Session info ───────────────────────────────────────────────────────────────
 setting  value
 version  R version 4.5.0 (2025-04-11)
 os       Ubuntu 24.04.2 LTS
 system   x86_64, linux-gnu
 ui       X11
 language (EN)
 collate  en_US.UTF-8
 ctype    en_US.UTF-8
 tz       Etc/UTC
 date     2025-07-05
 pandoc   3.7.0.2 @ /usr/bin/ (via rmarkdown)
 quarto   1.7.32 @ /usr/local/bin/quarto

─ Packages ───────────────────────────────────────────────────────────────────
 package           * version date (UTC) lib source
 backports           1.5.0   2024-05-23 [1] RSPM
 brio                1.1.5   2024-04-24 [1] RSPM
 checkmate           2.3.2   2024-07-29 [1] RSPM
 cli                 3.6.5   2025-04-23 [1] RSPM
 codetools           0.2-20  2024-03-31 [2] CRAN (R 4.5.0)
 curl                6.4.0   2025-06-22 [1] RSPM
 digest              0.6.37  2024-08-19 [1] RSPM
 dplyr             * 1.1.4   2023-11-17 [1] RSPM
 evaluate            1.0.4   2025-06-18 [1] RSPM
 fastmap             1.2.0   2024-05-15 [1] RSPM
 formatters        * 0.5.11  2025-04-09 [1] RSPM
 generics            0.1.4   2025-05-09 [1] RSPM
 glue                1.8.0   2024-09-30 [1] RSPM
 htmltools           0.5.8.1 2024-04-04 [1] RSPM
 htmlwidgets         1.6.4   2023-12-06 [1] RSPM
 jsonlite            2.0.0   2025-03-27 [1] RSPM
 knitr               1.50    2025-03-16 [1] RSPM
 lifecycle           1.0.4   2023-11-07 [1] RSPM
 magrittr            2.0.3   2022-03-30 [1] RSPM
 pillar              1.11.0  2025-07-04 [1] RSPM
 pkgcache            2.2.4   2025-05-26 [1] RSPM
 pkgconfig           2.0.3   2019-09-22 [1] RSPM
 processx            3.8.6   2025-02-21 [1] RSPM
 ps                  1.9.1   2025-04-12 [1] RSPM
 R6                  2.6.1   2025-02-15 [1] RSPM
 random.cdisc.data   0.3.16  2024-10-10 [1] RSPM
 rlang               1.1.6   2025-04-11 [1] RSPM
 rlistings         * 0.2.12  2025-06-15 [1] RSPM
 rmarkdown           2.29    2024-11-04 [1] RSPM
 sessioninfo         1.2.3   2025-02-05 [1] any (@1.2.3)
 stringi             1.8.7   2025-03-27 [1] RSPM
 stringr             1.5.1   2023-11-14 [1] RSPM
 testthat            3.2.3   2025-01-13 [1] RSPM
 tibble            * 3.3.0   2025-06-08 [1] RSPM
 tidyselect          1.2.1   2024-03-11 [1] RSPM
 vctrs               0.6.5   2023-12-01 [1] RSPM
 withr               3.0.2   2024-10-28 [1] RSPM
 xfun                0.52    2025-04-02 [1] RSPM
 yaml                2.3.10  2024-07-26 [1] RSPM

 [1] /usr/local/lib/R/site-library
 [2] /usr/local/lib/R/library
 [3] /github/home/R/x86_64-pc-linux-gnu-library/4.5
 * ── Packages attached to the search path.

──────────────────────────────────────────────────────────────────────────────

.lock file

Download the .lock file and use renv::restore() on it to recreate environment used to generate this website.

Download

AEL04
CML02A_GL
Source Code
---
title: CML01
subtitle: Listing of Previous and Concomitant Medications
---

------------------------------------------------------------------------

{{< include ../../_utils/envir_hook.qmd >}}

```{r setup, echo = FALSE, warning = FALSE, message = FALSE}
library(dplyr)
library(rlistings)

adcm <- random.cdisc.data::cadcm

out <- adcm %>%
  filter(!is.na(CMDECOD)) %>%
  mutate(
    ID = paste(SITEID, SUBJID, sep = "/"),
    AGSXRC = paste(AGE, SEX, RACE, sep = "/"),
    TRTSD = toupper(format(as.Date(TRTSDTM), "%d%b%Y")),
    CMASTD = toupper(format(as.Date(ASTDTM), "%d%b%Y")),
    CMSTRFL = ifelse(ASTDY < 0, "Yes", "No"),
    CMENRFL = ifelse(CMENRTPT == "ONGOING", "Yes", "No")
  ) %>%
  select(
    ID, AGSXRC, TRT01A, CMDECOD, TRTSD, CMASTD, ASTDY, ADURN,
    CMSTRFL, CMENRFL, CMDOSE, CMDOSU, CMDOSFRQ, CMROUTE
  )

var_labels(out) <- c(
  ID = "Center/Patient ID",
  AGSXRC = "Age/Sex/Race",
  TRT01A = "Treatment",
  CMDECOD = "Medication Name",
  TRTSD = "Date of First\nStudy Drug\nAdministration",
  CMASTD = "Medication\nStart Date",
  ASTDY = "Study Day",
  ADURN = "Duration\n(days)",
  CMSTRFL = "Previous?",
  CMENRFL = "Ongoing\nat Final\nContact?",
  CMDOSE = "Dose",
  CMDOSU = "Dose Unit",
  CMDOSFRQ = "Frequency",
  CMROUTE = "Route"
)
```

```{r include = FALSE}
webr_code_labels <- c("setup")
```

{{< include ../../_utils/webr_no_include.qmd >}}

## Output

:::: panel-tabset
## Standard Listing

::: {.panel-tabset .nav-justified group="webr"}
## {{< fa regular file-lines sm fw >}} Preview

```{r lsting, test = list(lsting = "lsting")}
lsting <- as_listing(
  out,
  key_cols = c("TRT01A", "ID", "AGSXRC", "CMDECOD"),
  disp_cols = names(out),
  main_title = "Listing of Previous and Concomitant Medications"
)

head(lsting, 20)
```

```{r include = FALSE}
webr_code_labels <- c("lsting")
```

{{< include ../../_utils/webr.qmd >}}
:::

## Data Setup

```{r setup}
#| code-fold: show
```
::::

{{< include ../../_utils/save_results.qmd >}}

{{< include ../../repro.qmd >}}

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