DSUR4

Listing of Patients Who Died During Reporting Period

Output

Code
lsting <- as_listing(
  out,
  key_cols = c("ARM"),
  disp_cols = names(out),
  main_title = "Listing of Patients Who Died During Reporting Period",
  subtitles = paste("Number of patient deaths during reporting period =", death_num)
)

head(lsting, 20)
Listing of Patients Who Died During Reporting Period
Number of patient deaths during reporting period = 70

———————————————————————————————————————————————————————————————————
Treatment Group   Center/Patient ID          Cause of Death        
———————————————————————————————————————————————————————————————————
   A: Drug X        CHN-3/id-128              ADVERSE EVENT        
                     RUS-1/id-52           DISEASE PROGRESSION     
                    CHN-1/id-235              ADVERSE EVENT        
                    CHN-5/id-108                 MISSING           
                    CHN-17/id-182           LOST TO FOLLOW UP      
                    BRA-11/id-217             ADVERSE EVENT        
                    CHN-15/id-14           DISEASE PROGRESSION     
                    CHN-2/id-274                 SUICIDE           
                    USA-11/id-339                UNKNOWN           
                    BRA-15/id-36           DISEASE PROGRESSION     
                    CHN-1/id-199           DISEASE PROGRESSION     
                    CHN-2/id-272           DISEASE PROGRESSION     
                    CHN-1/id-123           DISEASE PROGRESSION     
                    CHN-12/id-258                SUICIDE           
                    CHN-17/id-92            LOST TO FOLLOW UP      
                     NGA-1/id-46           DISEASE PROGRESSION     
                     BRA-1/id-93              ADVERSE EVENT        
                     CHN-6/id-30      Post-study reporting of death
                    CAN-11/id-139             ADVERSE EVENT        
                    GBR-1/id-319              ADVERSE EVENT

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Code
library(dplyr)
library(rlistings)

adsl <- random.cdisc.data::cadsl

out <- adsl %>%
  filter(DTHFL == "Y") %>%
  mutate(ID = paste(SITEID, SUBJID, sep = "/")) %>%
  select(ARM, ID, DTHCAUS)
death_num <- length(unique(out$ID))
var_labels(out) <- c(
  ARM = "Treatment Group",
  ID = "Center/Patient ID",
  DTHCAUS = "Cause of Death"
)

Reproducibility

Timestamp

[1] "2024-11-21 15:29:15 UTC"

Session Info

─ Session info ───────────────────────────────────────────────────────────────
 setting  value
 version  R version 4.4.1 (2024-06-14)
 os       Ubuntu 22.04.5 LTS
 system   x86_64, linux-gnu
 ui       X11
 language (EN)
 collate  en_US.UTF-8
 ctype    en_US.UTF-8
 tz       Etc/UTC
 date     2024-11-21
 pandoc   3.4 @ /usr/bin/ (via rmarkdown)

─ Packages ───────────────────────────────────────────────────────────────────
 package           * version date (UTC) lib source
 backports           1.5.0   2024-05-23 [1] RSPM
 brio                1.1.5   2024-04-24 [1] RSPM
 checkmate           2.3.2   2024-07-29 [1] RSPM
 cli                 3.6.3   2024-06-21 [1] RSPM
 codetools           0.2-20  2024-03-31 [2] CRAN (R 4.4.1)
 curl                6.0.1   2024-11-14 [1] RSPM
 digest              0.6.37  2024-08-19 [1] RSPM
 dplyr             * 1.1.4   2023-11-17 [1] RSPM
 evaluate            1.0.1   2024-10-10 [1] RSPM
 fansi               1.0.6   2023-12-08 [1] RSPM
 fastmap             1.2.0   2024-05-15 [1] RSPM
 formatters        * 0.5.9   2024-09-12 [1] RSPM
 generics            0.1.3   2022-07-05 [1] RSPM
 glue                1.8.0   2024-09-30 [1] RSPM
 htmltools           0.5.8.1 2024-04-04 [1] RSPM
 htmlwidgets         1.6.4   2023-12-06 [1] RSPM
 jsonlite            1.8.9   2024-09-20 [1] RSPM
 knitr               1.49    2024-11-08 [1] RSPM
 lifecycle           1.0.4   2023-11-07 [1] RSPM
 magrittr            2.0.3   2022-03-30 [1] RSPM
 pillar              1.9.0   2023-03-22 [1] RSPM
 pkgcache            2.2.3   2024-09-12 [1] RSPM
 pkgconfig           2.0.3   2019-09-22 [1] RSPM
 processx            3.8.4   2024-03-16 [1] RSPM
 ps                  1.8.1   2024-10-28 [1] RSPM
 R6                  2.5.1   2021-08-19 [1] RSPM
 random.cdisc.data   0.3.16  2024-10-10 [1] RSPM
 rlang               1.1.4   2024-06-04 [1] RSPM
 rlistings         * 0.2.9   2024-06-20 [1] RSPM
 rmarkdown           2.29    2024-11-04 [1] RSPM
 sessioninfo         1.2.2   2021-12-06 [1] any (@1.2.2)
 stringi             1.8.4   2024-05-06 [1] RSPM
 stringr             1.5.1   2023-11-14 [1] RSPM
 testthat            3.2.1.1 2024-04-14 [1] RSPM
 tibble            * 3.2.1   2023-03-20 [1] RSPM
 tidyselect          1.2.1   2024-03-11 [1] RSPM
 utf8                1.2.4   2023-10-22 [1] RSPM
 vctrs               0.6.5   2023-12-01 [1] RSPM
 withr               3.0.2   2024-10-28 [1] RSPM
 xfun                0.49    2024-10-31 [1] RSPM
 yaml                2.3.10  2024-07-26 [1] RSPM

 [1] /usr/local/lib/R/site-library
 [2] /usr/local/lib/R/library

──────────────────────────────────────────────────────────────────────────────

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