TLG Catalog - Stable
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  3. EXL01
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  • Appendix
    • Reproducibility

  • Index

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  • Output
  • Reproducibility
    • Timestamp
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  1. Listings
  2. Exposure
  3. EXL01

EXL01

Listing of Exposure to Study Drug


Output

  • Standard Listing
  • Data Setup
  • Preview
  • Try this using WebR
Code
lsting <- as_listing(
  out,
  key_cols = c("TRT01A", "CRTNPT", "AVISIT"),
  disp_cols = names(out),
  main_title = "Listing of Exposure to Study Drug"
)

head(lsting, 20)
Listing of Exposure to Study Drug

——————————————————————————————————————————————————————————————————————————————————————————————————————————————
                                                Study Day   Study Day                                         
Treatment   Center/Subject ID       Visit         From         To       Dose   Unit   Frequency      Route    
——————————————————————————————————————————————————————————————————————————————————————————————————————————————
A: Drug X     BRA-1/id-105        SCREENING        -1          -1       960     mg      ONCE      INTRAVENOUS 
                                  BASELINE          1           1       960     mg      ONCE      INTRAVENOUS 
                                WEEK 1 DAY 8        8           8       720     mg      ONCE      SUBCUTANEOUS
                                WEEK 2 DAY 15      15          15       480     mg      ONCE      INTRAVENOUS 
                                WEEK 3 DAY 22      22          22       480     mg      ONCE      INTRAVENOUS 
                                WEEK 4 DAY 29      29          29       720     mg      ONCE      INTRAVENOUS 
                                WEEK 5 DAY 36      36          36       720     mg      ONCE      INTRAVENOUS 
              BRA-1/id-134        SCREENING        -1          -1       960     mg      ONCE      INTRAVENOUS 
                                  BASELINE          1           1       720     mg      ONCE      INTRAVENOUS 
                                WEEK 1 DAY 8        8           8       720     mg      ONCE      INTRAVENOUS 
                                WEEK 2 DAY 15      15          15       960     mg      ONCE      INTRAVENOUS 
                                WEEK 3 DAY 22      22          22       720     mg      ONCE      INTRAVENOUS 
                                WEEK 4 DAY 29      29          29       960     mg      ONCE      INTRAVENOUS 
                                WEEK 5 DAY 36      36          36       960     mg      ONCE      INTRAVENOUS 
               BRA-1/id-42        SCREENING        -1          -1       960     mg      ONCE      INTRAVENOUS 
                                  BASELINE          1           1       960     mg      ONCE      INTRAVENOUS 
                                WEEK 1 DAY 8        8           8       720     mg      ONCE      SUBCUTANEOUS
                                WEEK 2 DAY 15      15          15       720     mg      ONCE      INTRAVENOUS 
                                WEEK 3 DAY 22      22          22       720     mg      ONCE      INTRAVENOUS 
                                WEEK 4 DAY 29      29          29       480     mg      ONCE      INTRAVENOUS 
Experimental use!

WebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.

Code
library(dplyr)
library(rlistings)

adex <- random.cdisc.data::cadex

out <- adex %>%
  filter(PARAMCD == "DOSE" & !is.na(AVAL) & SAFFL == "Y") %>%
  mutate(
    CRTNPT = paste(SITEID, SUBJID, sep = "/")
  ) %>%
  arrange(CRTNPT, AVISIT) %>%
  select(CRTNPT, AVISIT, EXSTDY, EXENDY, TRT01A, AVAL, AVALU, EXDOSFRQ, EXROUTE)

var_labels(out) <- c(
  CRTNPT = "Center/Subject ID",
  AVISIT = "Visit",
  EXSTDY = "Study Day\nFrom",
  EXENDY = "Study Day\nTo",
  TRT01A = "Treatment",
  AVAL = "Dose",
  AVALU = "Unit",
  EXDOSFRQ = "Frequency",
  EXROUTE = "Route"
)

Reproducibility

Timestamp

[1] "2025-07-05 17:29:25 UTC"

Session Info

─ Session info ───────────────────────────────────────────────────────────────
 setting  value
 version  R version 4.5.0 (2025-04-11)
 os       Ubuntu 24.04.2 LTS
 system   x86_64, linux-gnu
 ui       X11
 language (EN)
 collate  en_US.UTF-8
 ctype    en_US.UTF-8
 tz       Etc/UTC
 date     2025-07-05
 pandoc   3.7.0.2 @ /usr/bin/ (via rmarkdown)
 quarto   1.7.32 @ /usr/local/bin/quarto

─ Packages ───────────────────────────────────────────────────────────────────
 package           * version date (UTC) lib source
 backports           1.5.0   2024-05-23 [1] RSPM
 brio                1.1.5   2024-04-24 [1] RSPM
 checkmate           2.3.2   2024-07-29 [1] RSPM
 cli                 3.6.5   2025-04-23 [1] RSPM
 codetools           0.2-20  2024-03-31 [2] CRAN (R 4.5.0)
 curl                6.4.0   2025-06-22 [1] RSPM
 digest              0.6.37  2024-08-19 [1] RSPM
 dplyr             * 1.1.4   2023-11-17 [1] RSPM
 evaluate            1.0.4   2025-06-18 [1] RSPM
 fastmap             1.2.0   2024-05-15 [1] RSPM
 formatters        * 0.5.11  2025-04-09 [1] RSPM
 generics            0.1.4   2025-05-09 [1] RSPM
 glue                1.8.0   2024-09-30 [1] RSPM
 htmltools           0.5.8.1 2024-04-04 [1] RSPM
 htmlwidgets         1.6.4   2023-12-06 [1] RSPM
 jsonlite            2.0.0   2025-03-27 [1] RSPM
 knitr               1.50    2025-03-16 [1] RSPM
 lifecycle           1.0.4   2023-11-07 [1] RSPM
 magrittr            2.0.3   2022-03-30 [1] RSPM
 pillar              1.11.0  2025-07-04 [1] RSPM
 pkgcache            2.2.4   2025-05-26 [1] RSPM
 pkgconfig           2.0.3   2019-09-22 [1] RSPM
 processx            3.8.6   2025-02-21 [1] RSPM
 ps                  1.9.1   2025-04-12 [1] RSPM
 R6                  2.6.1   2025-02-15 [1] RSPM
 random.cdisc.data   0.3.16  2024-10-10 [1] RSPM
 rlang               1.1.6   2025-04-11 [1] RSPM
 rlistings         * 0.2.12  2025-06-15 [1] RSPM
 rmarkdown           2.29    2024-11-04 [1] RSPM
 sessioninfo         1.2.3   2025-02-05 [1] any (@1.2.3)
 stringi             1.8.7   2025-03-27 [1] RSPM
 stringr             1.5.1   2023-11-14 [1] RSPM
 testthat            3.2.3   2025-01-13 [1] RSPM
 tibble            * 3.3.0   2025-06-08 [1] RSPM
 tidyselect          1.2.1   2024-03-11 [1] RSPM
 vctrs               0.6.5   2023-12-01 [1] RSPM
 withr               3.0.2   2024-10-28 [1] RSPM
 xfun                0.52    2025-04-02 [1] RSPM
 yaml                2.3.10  2024-07-26 [1] RSPM

 [1] /usr/local/lib/R/site-library
 [2] /usr/local/lib/R/library
 [3] /github/home/R/x86_64-pc-linux-gnu-library/4.5
 * ── Packages attached to the search path.

──────────────────────────────────────────────────────────────────────────────

.lock file

Download the .lock file and use renv::restore() on it to recreate environment used to generate this website.

Download

ONCL01
LBL01
Source Code
---
title: EXL01
subtitle: Listing of Exposure to Study Drug
---

------------------------------------------------------------------------

{{< include ../../_utils/envir_hook.qmd >}}

```{r setup, echo = FALSE, warning = FALSE, message = FALSE}
library(dplyr)
library(rlistings)

adex <- random.cdisc.data::cadex

out <- adex %>%
  filter(PARAMCD == "DOSE" & !is.na(AVAL) & SAFFL == "Y") %>%
  mutate(
    CRTNPT = paste(SITEID, SUBJID, sep = "/")
  ) %>%
  arrange(CRTNPT, AVISIT) %>%
  select(CRTNPT, AVISIT, EXSTDY, EXENDY, TRT01A, AVAL, AVALU, EXDOSFRQ, EXROUTE)

var_labels(out) <- c(
  CRTNPT = "Center/Subject ID",
  AVISIT = "Visit",
  EXSTDY = "Study Day\nFrom",
  EXENDY = "Study Day\nTo",
  TRT01A = "Treatment",
  AVAL = "Dose",
  AVALU = "Unit",
  EXDOSFRQ = "Frequency",
  EXROUTE = "Route"
)
```

```{r include = FALSE}
webr_code_labels <- c("setup")
```

{{< include ../../_utils/webr_no_include.qmd >}}

## Output

:::: panel-tabset
## Standard Listing

::: {.panel-tabset .nav-justified group="webr"}
## {{< fa regular file-lines sm fw >}} Preview

```{r lsting, test = list(lsting = "lsting")}
lsting <- as_listing(
  out,
  key_cols = c("TRT01A", "CRTNPT", "AVISIT"),
  disp_cols = names(out),
  main_title = "Listing of Exposure to Study Drug"
)

head(lsting, 20)
```

```{r include = FALSE}
webr_code_labels <- c("lsting")
```

{{< include ../../_utils/webr.qmd >}}
:::

## Data Setup

```{r setup}
#| code-fold: show
```
::::

{{< include ../../_utils/save_results.qmd >}}

{{< include ../../repro.qmd >}}

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