MNG01

Mean Plot

Output

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Code

plot <- g_lineplot(
  df = adlb_f,
  alt_counts_df = adsl_f,
  subtitle = "Laboratory Test:"
)
plot

Experimental use!

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Code

plot <- g_lineplot(
  df = advs_f,
  alt_counts_df = adsl_f,
  variables = control_lineplot_vars(y = "CHG"),
  title = "Plot of Mean and 95% Confidence Intervals of Change from Baseline by Visit",
  subtitle = "Assessment:"
)
plot

Experimental use!

WebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.

Preview
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Code

plot <- g_lineplot(
  df = adlb_f,
  alt_counts_df = adsl_f,
  interval = "mean_sdi",
  whiskers = c("mean_sdi_lwr", "mean_sdi_upr"),
  title = "Plot of Mean (+/-SD)",
  subtitle = "Laboratory Test:"
)
plot

Experimental use!

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Preview
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Code

plot <- g_lineplot(
  df = adlb_f,
  alt_counts_df = adsl_f,
  control = control_analyze_vars(conf_level = 0.80),
  title = "Plot of Mean and 80% Confidence Limits by Visit",
  subtitle = "Laboratory Test:"
)
plot

Experimental use!

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Code

plot <- g_lineplot(
  df = adlb_f,
  alt_counts_df = adsl_f,
  table = "n",
  subtitle = "Laboratory Test:"
)
plot

Experimental use!

WebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.

Preview
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Code

plot <- g_lineplot(
  df = adlb_f,
  alt_counts_df = adsl_f,
  table = c("n", "mean", "mean_ci"),
  subtitle = "Laboratory Test:"
)
plot

Experimental use!

WebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.

This option is not supported.

Preview
Try this using WebR

Code

plot <- g_lineplot(
  df = adlb_f,
  alt_counts_df = adsl_f,
  whiskers = "mean_ci_upr",
  subtitle = "Laboratory Test:"
)
plot

Experimental use!

WebR is a tool allowing you to run R code in the web browser. Modify the code below and click run to see the results. Alternatively, copy the code and click here to open WebR in a new tab.

Code

library(dplyr)
library(tern)
library(nestcolor)

adsl <- random.cdisc.data::cadsl
adlb <- random.cdisc.data::cadlb
advs <- random.cdisc.data::cadvs

adsl_f <- adsl %>%
  filter(SAFFL == "Y") %>%
  df_explicit_na()

adlb_f <- adlb %>%
  mutate(AVISIT = forcats::fct_reorder(AVISIT, AVISITN, min)) %>%
  dplyr::filter(
    SAFFL == "Y",
    ANL01FL == "Y",
    ONTRTFL == "Y",
    PARAMCD == "ALT",
    AVISIT != "SCREENING"
  ) %>%
  droplevels() %>%
  df_explicit_na()

advs_f <- advs %>%
  mutate(AVISIT = forcats::fct_reorder(AVISIT, AVISITN, min)) %>%
  dplyr::filter(
    SAFFL == "Y",
    ONTRTFL == "Y",
    PARAMCD == "DIABP",
    AVISIT != "SCREENING"
  ) %>%
  droplevels() %>%
  df_explicit_na()

Code

library(teal.modules.clinical)

## Data reproducible code
data <- teal_data()
data <- within(data, {
  library(dplyr)
  library(forcats)

  ADSL <- random.cdisc.data::cadsl
  ADLB <- random.cdisc.data::cadlb %>%
    mutate(AVISIT = fct_reorder(AVISIT, AVISITN, min))
})
datanames <- c("ADSL", "ADLB")
datanames(data) <- datanames

Warning: `datanames<-()` was deprecated in teal.data 0.7.0.
ℹ invalid to use `datanames()<-` or `names()<-` on an object of class
  `teal_data`. See ?names.teal_data

Code

join_keys(data) <- default_cdisc_join_keys[datanames]

## Reusable Configuration For Modules
ADSL <- data[["ADSL"]]
ADLB <- data[["ADLB"]]

## Setup App
app <- init(
  data = data,
  modules = modules(
    tm_g_lineplot(
      label = "LINE PLOT",
      dataname = "ADLB",
      strata = choices_selected(
        variable_choices(ADSL, c("ARM", "ARMCD", "ACTARMCD")),
        "ARM"
      ),
      y = choices_selected(
        variable_choices(ADLB, c("AVAL", "BASE", "CHG", "PCHG")),
        "AVAL"
      ),
      param = choices_selected(
        value_choices(ADLB, "PARAMCD", "PARAM"),
        "ALT"
      )
    )
  )
)

Warning: The `strata` argument of `tm_g_lineplot()` is deprecated as of
teal.modules.clinical 0.9.1. Please use the `group_var` argument instead.

Code

shinyApp(app$ui, app$server)

Experimental use!

shinylive allow you to modify to run shiny application entirely in the web browser. Modify the code below and click re-run the app to see the results. The performance is slighly worse and some of the features (e.g. downloading) might not work at all.

#| '!! shinylive warning !!': |
#|   shinylive does not work in self-contained HTML documents.
#|   Please set `embed-resources: false` in your metadata.
#| standalone: true
#| viewerHeight: 800
#| editorHeight: 200
#| components: [viewer, editor]
#| layout: vertical

# -- WEBR HELPERS --
options(webr_pkg_repos = c("r-universe" = "https://insightsengineering.r-universe.dev", getOption("webr_pkg_repos")))

# -- APP CODE --
library(teal.modules.clinical)

## Data reproducible code
data <- teal_data()
data <- within(data, {
  library(dplyr)
  library(forcats)

  ADSL <- random.cdisc.data::cadsl
  ADLB <- random.cdisc.data::cadlb %>%
    mutate(AVISIT = fct_reorder(AVISIT, AVISITN, min))
})
datanames <- c("ADSL", "ADLB")
datanames(data) <- datanames
join_keys(data) <- default_cdisc_join_keys[datanames]

## Reusable Configuration For Modules
ADSL <- data[["ADSL"]]
ADLB <- data[["ADLB"]]

## Setup App
app <- init(
  data = data,
  modules = modules(
    tm_g_lineplot(
      label = "LINE PLOT",
      dataname = "ADLB",
      strata = choices_selected(
        variable_choices(ADSL, c("ARM", "ARMCD", "ACTARMCD")),
        "ARM"
      ),
      y = choices_selected(
        variable_choices(ADLB, c("AVAL", "BASE", "CHG", "PCHG")),
        "AVAL"
      ),
      param = choices_selected(
        value_choices(ADLB, "PARAMCD", "PARAM"),
        "ALT"
      )
    )
  )
)

shinyApp(app$ui, app$server)

Reproducibility

Timestamp

[1] "2025-07-05 18:03:18 UTC"

Session Info

─ Session info ───────────────────────────────────────────────────────────────
 setting  value
 version  R version 4.5.0 (2025-04-11)
 os       Ubuntu 24.04.2 LTS
 system   x86_64, linux-gnu
 ui       X11
 language (EN)
 collate  en_US.UTF-8
 ctype    en_US.UTF-8
 tz       Etc/UTC
 date     2025-07-05
 pandoc   3.7.0.2 @ /usr/bin/ (via rmarkdown)
 quarto   1.7.32 @ /usr/local/bin/quarto

─ Packages ───────────────────────────────────────────────────────────────────
 package               * version  date (UTC) lib source
 backports               1.5.0    2024-05-23 [1] RSPM
 brio                    1.1.5    2024-04-24 [1] RSPM
 broom                   1.0.8    2025-03-28 [1] RSPM
 bslib                   0.9.0    2025-01-30 [1] RSPM
 cachem                  1.1.0    2024-05-16 [1] RSPM
 callr                   3.7.6    2024-03-25 [1] RSPM
 checkmate               2.3.2    2024-07-29 [1] RSPM
 chromote                0.5.1    2025-04-24 [1] RSPM
 cli                     3.6.5    2025-04-23 [1] RSPM
 coda                    0.19-4.1 2024-01-31 [1] CRAN (R 4.5.0)
 codetools               0.2-20   2024-03-31 [2] CRAN (R 4.5.0)
 cowplot                 1.1.3    2024-01-22 [1] RSPM
 curl                    6.4.0    2025-06-22 [1] RSPM
 dichromat               2.0-0.1  2022-05-02 [1] CRAN (R 4.5.0)
 digest                  0.6.37   2024-08-19 [1] RSPM
 dplyr                 * 1.1.4    2023-11-17 [1] RSPM
 emmeans                 1.11.1   2025-05-04 [1] RSPM
 estimability            1.5.1    2024-05-12 [1] RSPM
 evaluate                1.0.4    2025-06-18 [1] RSPM
 farver                  2.1.2    2024-05-13 [1] RSPM
 fastmap                 1.2.0    2024-05-15 [1] RSPM
 fontawesome             0.5.3    2024-11-16 [1] RSPM
 forcats               * 1.0.0    2023-01-29 [1] RSPM
 formatR                 1.14     2023-01-17 [1] CRAN (R 4.5.0)
 formatters            * 0.5.11   2025-04-09 [1] RSPM
 geepack                 1.3.12   2024-09-23 [1] RSPM
 generics                0.1.4    2025-05-09 [1] RSPM
 ggplot2                 3.5.2    2025-04-09 [1] RSPM
 glue                    1.8.0    2024-09-30 [1] RSPM
 gtable                  0.3.6    2024-10-25 [1] RSPM
 htmltools               0.5.8.1  2024-04-04 [1] RSPM
 htmlwidgets             1.6.4    2023-12-06 [1] RSPM
 httpuv                  1.6.16   2025-04-16 [1] RSPM
 jquerylib               0.1.4    2021-04-26 [1] RSPM
 jsonlite                2.0.0    2025-03-27 [1] RSPM
 knitr                   1.50     2025-03-16 [1] RSPM
 labeling                0.4.3    2023-08-29 [1] RSPM
 later                   1.4.2    2025-04-08 [1] RSPM
 lattice                 0.22-7   2025-04-02 [2] CRAN (R 4.5.0)
 lifecycle               1.0.4    2023-11-07 [1] RSPM
 logger                  0.4.0    2024-10-22 [1] RSPM
 magrittr              * 2.0.3    2022-03-30 [1] RSPM
 MASS                    7.3-65   2025-02-28 [2] CRAN (R 4.5.0)
 Matrix                  1.7-3    2025-03-11 [1] CRAN (R 4.5.0)
 memoise                 2.0.1    2021-11-26 [1] RSPM
 mime                    0.13     2025-03-17 [1] RSPM
 multcomp                1.4-28   2025-01-29 [1] RSPM
 mvtnorm                 1.3-3    2025-01-10 [1] RSPM
 nestcolor             * 0.1.3    2025-01-21 [1] RSPM
 nlme                    3.1-168  2025-03-31 [2] CRAN (R 4.5.0)
 pillar                  1.11.0   2025-07-04 [1] RSPM
 pkgcache                2.2.4    2025-05-26 [1] RSPM
 pkgconfig               2.0.3    2019-09-22 [1] RSPM
 processx                3.8.6    2025-02-21 [1] RSPM
 promises                1.3.3    2025-05-29 [1] RSPM
 ps                      1.9.1    2025-04-12 [1] RSPM
 purrr                   1.0.4    2025-02-05 [1] RSPM
 R6                      2.6.1    2025-02-15 [1] RSPM
 ragg                    1.4.0    2025-04-10 [1] RSPM
 random.cdisc.data       0.3.16   2024-10-10 [1] RSPM
 rbibutils               2.3      2024-10-04 [1] RSPM
 RColorBrewer            1.1-3    2022-04-03 [1] RSPM
 Rcpp                    1.1.0    2025-07-02 [1] RSPM
 Rdpack                  2.6.4    2025-04-09 [1] RSPM
 rlang                   1.1.6    2025-04-11 [1] RSPM
 rmarkdown               2.29     2024-11-04 [1] RSPM
 rtables               * 0.6.13   2025-06-19 [1] RSPM
 sandwich                3.1-1    2024-09-15 [1] RSPM
 sass                    0.4.10   2025-04-11 [1] RSPM
 scales                  1.4.0    2025-04-24 [1] RSPM
 sessioninfo             1.2.3    2025-02-05 [1] any (@1.2.3)
 shiny                 * 1.11.1   2025-07-03 [1] RSPM
 shinycssloaders         1.1.0    2024-07-30 [1] RSPM
 shinyjs                 2.1.0    2021-12-23 [1] RSPM
 shinyvalidate           0.1.3    2023-10-04 [1] RSPM
 shinyWidgets            0.9.0    2025-02-21 [1] RSPM
 stringi                 1.8.7    2025-03-27 [1] RSPM
 stringr                 1.5.1    2023-11-14 [1] RSPM
 survival                3.8-3    2024-12-17 [2] CRAN (R 4.5.0)
 systemfonts             1.2.3    2025-04-30 [1] RSPM
 teal                  * 0.16.0   2025-02-23 [1] RSPM
 teal.code             * 0.6.1    2025-02-14 [1] RSPM
 teal.data             * 0.7.0    2025-01-28 [1] RSPM
 teal.logger             0.3.2    2025-02-14 [1] RSPM
 teal.modules.clinical * 0.10.0   2025-02-28 [1] RSPM
 teal.reporter           0.4.0    2025-01-24 [1] RSPM
 teal.slice            * 0.6.0    2025-02-03 [1] RSPM
 teal.transform        * 0.6.0    2025-02-12 [1] RSPM
 teal.widgets            0.4.3    2025-01-31 [1] RSPM
 tern                  * 0.9.9    2025-06-20 [1] RSPM
 tern.gee                0.1.5    2024-08-23 [1] RSPM
 testthat                3.2.3    2025-01-13 [1] RSPM
 textshaping             1.0.1    2025-05-01 [1] RSPM
 TH.data                 1.1-3    2025-01-17 [1] RSPM
 tibble                  3.3.0    2025-06-08 [1] RSPM
 tidyr                   1.3.1    2024-01-24 [1] RSPM
 tidyselect              1.2.1    2024-03-11 [1] RSPM
 vctrs                   0.6.5    2023-12-01 [1] RSPM
 webshot                 0.5.5    2023-06-26 [1] CRAN (R 4.5.0)
 webshot2                0.1.2    2025-04-23 [1] RSPM
 websocket               1.4.4    2025-04-10 [1] RSPM
 withr                   3.0.2    2024-10-28 [1] RSPM
 xfun                    0.52     2025-04-02 [1] RSPM
 xtable                  1.8-4    2019-04-21 [1] RSPM
 yaml                    2.3.10   2024-07-26 [1] RSPM
 zoo                     1.8-14   2025-04-10 [1] RSPM

 [1] /usr/local/lib/R/site-library
 [2] /usr/local/lib/R/library
 [3] /github/home/R/x86_64-pc-linux-gnu-library/4.5
 * ── Packages attached to the search path.

──────────────────────────────────────────────────────────────────────────────

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Output

teal App

Reproducibility

Timestamp

Session Info

.lock file

`teal` App

`.lock` file