MHL01

Listing of Medical History and Concurrent Diseases

Standard Listing
Data Setup

Preview
Try this using WebR

Code

lsting <- as_listing(
  out,
  key_cols = c("TRT01A", "ID", "ASR", "MHBODSYS", "MHDECOD"),
  disp_cols = names(out),
  main_title = "Listing of Medical History and Concurrent Diseases"
)

head(lsting, 20)

Listing of Medical History and Concurrent Diseases

—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————
                                                                                       Date of First                                                                         
                                                                                         Study Drug     Start Date   Start Day     End Date     End Day       Time Relation  
Treatment   Center/Patient ID            Age/Sex/Race            SOC    Disease Term   Administration   of Disease   of Disease   of Disease   of Disease      of Disease    
—————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————
A: Drug X     BRA-1/id-134                47/M/WHITE             cl A    trm A_2/2       04NOV2020      21SEP2021       321       16FEB2022       469       PRIOR_CONCOMITANT
                                                                                         04NOV2020      02DEC2021       393       13JAN2022       435       PRIOR_CONCOMITANT
                                                                 cl B    trm B_2/3       04NOV2020      15APR2021       162       04OCT2021       334       PRIOR_CONCOMITANT
                                                                 cl D    trm D_2/3       04NOV2020      19MAY2021       196       31OCT2021       361       PRIOR_CONCOMITANT
               BRA-1/id-42      36/M/BLACK OR AFRICAN AMERICAN   cl A    trm A_2/2       01JAN2020      09JUN2020       160       22FEB2021       418       PRIOR_CONCOMITANT
                                                                                         01JAN2020      04APR2021       459       15OCT2021       653       PRIOR_CONCOMITANT
                                                                                         01JAN2020      20APR2021       475       10AUG2021       587       PRIOR_CONCOMITANT
                                                                 cl B    trm B_1/3       01JAN2020      15APR2021       470       23AUG2021       600       PRIOR_CONCOMITANT
                                                                                         01JAN2020      03OCT2021       641       17OCT2021       655       PRIOR_CONCOMITANT
                                                                         trm B_3/3       01JAN2020      19OCT2020       292       07DEC2020       341       PRIOR_CONCOMITANT
                                                                 cl C    trm C_1/2       01JAN2020      11MAY2021       496       19OCT2021       657       PRIOR_CONCOMITANT
                                                                         trm C_2/2       01JAN2020      09FEB2020        39       28JUN2021       544       PRIOR_CONCOMITANT
                                                                                         01JAN2020      05APR2020        95       04FEB2021       400       PRIOR_CONCOMITANT
                                                                 cl D    trm D_1/3       01JAN2020      05MAR2020        64       24NOV2021       693       PRIOR_CONCOMITANT
               BRA-1/id-93                34/F/ASIAN             cl A    trm A_1/2       20JUN2020      03NOV2020       136       19JAN2021       213       PRIOR_CONCOMITANT
                                                                 cl B    trm B_1/3       20JUN2020      25NOV2021       523       18DEC2021       546       PRIOR_CONCOMITANT
                                                                         trm B_3/3       20JUN2020      06FEB2022       596       15FEB2022       605       PRIOR_CONCOMITANT
                                                                 cl C    trm C_1/2       20JUN2020      28MAR2021       281       11JUL2021       386       PRIOR_CONCOMITANT
                                                                 cl D    trm D_1/3       20JUN2020      02MAY2021       316       06JAN2022       565       PRIOR_CONCOMITANT
                                                                         trm D_2/3       20JUN2020      03AUG2020        44       18SEP2020        90       PRIOR_CONCOMITANT

Experimental use!

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Code

library(dplyr)
library(rlistings)

admh <- random.cdisc.data::cadmh

out <- admh %>%
  mutate(
    ASR = paste(AGE, SEX, RACE, sep = "/"),
    ID = paste(SITEID, SUBJID, sep = "/"),
    TRTSDTM = toupper(format(as.Date(TRTSDTM), "%d%b%Y")),
    ASTDTM = toupper(format(as.Date(ASTDTM), "%d%b%Y")),
    AENDTM = toupper(format(as.Date(AENDTM), "%d%b%Y"))
  ) %>%
  select(ID, ASR, TRT01A, MHBODSYS, MHDECOD, TRTSDTM, ASTDTM, ASTDY, AENDTM, AENDY, ATIREL)

var_labels(out) <- c(
  ID = "Center/Patient ID",
  ASR = "Age/Sex/Race",
  TRT01A = "Treatment",
  MHBODSYS = "SOC",
  MHDECOD = "Disease Term",
  TRTSDTM = "Date of First\nStudy Drug\nAdministration",
  ASTDTM = "Start Date\nof Disease",
  ASTDY = "Start Day\nof Disease",
  AENDTM = "End Date\nof Disease",
  AENDY = "End Day\nof Disease",
  ATIREL = "Time Relation\nof Disease"
)

Reproducibility

Timestamp

[1] "2024-11-02 18:23:50 UTC"

Session Info

─ Session info ───────────────────────────────────────────────────────────────
 setting  value
 version  R version 4.4.1 (2024-06-14)
 os       Ubuntu 22.04.5 LTS
 system   x86_64, linux-gnu
 ui       X11
 language (EN)
 collate  en_US.UTF-8
 ctype    en_US.UTF-8
 tz       Etc/UTC
 date     2024-11-02
 pandoc   3.4 @ /usr/bin/ (via rmarkdown)

─ Packages ───────────────────────────────────────────────────────────────────
 package           * version     date (UTC) lib source
 backports           1.5.0       2024-05-23 [1] CRAN (R 4.4.1)
 brio                1.1.5       2024-04-24 [1] CRAN (R 4.4.1)
 checkmate           2.3.2       2024-07-29 [1] CRAN (R 4.4.1)
 cli                 3.6.3       2024-06-21 [1] CRAN (R 4.4.1)
 codetools           0.2-20      2024-03-31 [2] CRAN (R 4.4.1)
 digest              0.6.37      2024-08-19 [1] CRAN (R 4.4.1)
 dplyr             * 1.1.4       2023-11-17 [1] CRAN (R 4.4.1)
 evaluate            1.0.1       2024-10-10 [1] CRAN (R 4.4.1)
 fansi               1.0.6       2023-12-08 [1] CRAN (R 4.4.1)
 fastmap             1.2.0       2024-05-15 [1] CRAN (R 4.4.1)
 formatters        * 0.5.9.9003  2024-11-02 [1] git2r (https://github.com/insightsengineering/formatters.git@84e8c3e)
 generics            0.1.3       2022-07-05 [1] CRAN (R 4.4.1)
 glue                1.8.0       2024-09-30 [1] CRAN (R 4.4.1)
 htmltools           0.5.8.1     2024-04-04 [1] CRAN (R 4.4.1)
 htmlwidgets         1.6.4       2023-12-06 [1] CRAN (R 4.4.1)
 jsonlite            1.8.9       2024-09-20 [1] CRAN (R 4.4.1)
 knitr               1.48        2024-07-07 [1] CRAN (R 4.4.1)
 lifecycle           1.0.4       2023-11-07 [1] CRAN (R 4.4.1)
 magrittr            2.0.3       2022-03-30 [1] CRAN (R 4.4.1)
 pillar              1.9.0       2023-03-22 [1] CRAN (R 4.4.1)
 pkgconfig           2.0.3       2019-09-22 [1] CRAN (R 4.4.1)
 R6                  2.5.1       2021-08-19 [1] CRAN (R 4.4.1)
 random.cdisc.data   0.3.16.9001 2024-11-02 [1] git2r (https://github.com/insightsengineering/random.cdisc.data.git@a65bfbe)
 rlang               1.1.4       2024-06-04 [1] CRAN (R 4.4.1)
 rlistings         * 0.2.9.9008  2024-11-02 [1] git2r (https://github.com/insightsengineering/rlistings.git@f6bb1fb)
 rmarkdown           2.28        2024-08-17 [1] CRAN (R 4.4.1)
 sessioninfo         1.2.2       2021-12-06 [1] CRAN (R 4.4.1)
 stringi             1.8.4       2024-05-06 [1] CRAN (R 4.4.1)
 stringr             1.5.1       2023-11-14 [1] CRAN (R 4.4.1)
 testthat            3.2.1.1     2024-04-14 [1] CRAN (R 4.4.1)
 tibble            * 3.2.1       2023-03-20 [1] CRAN (R 4.4.1)
 tidyselect          1.2.1       2024-03-11 [1] CRAN (R 4.4.1)
 utf8                1.2.4       2023-10-22 [1] CRAN (R 4.4.1)
 vctrs               0.6.5       2023-12-01 [1] CRAN (R 4.4.1)
 withr               3.0.1       2024-07-31 [1] CRAN (R 4.4.1)
 xfun                0.48        2024-10-03 [1] CRAN (R 4.4.1)
 yaml                2.3.10      2024-07-26 [1] CRAN (R 4.4.1)

 [1] /usr/local/lib/R/site-library
 [2] /usr/local/lib/R/library

──────────────────────────────────────────────────────────────────────────────

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Reproducibility

Timestamp

Session Info

.lock file

`.lock` file