Function reference • teal.modules.clinical

teal.modules.clinical: Teal Modules for Standard Clinical Outputs

Tables

tm_t_abnormality(): Teal Module: Abnormality Summary Table

tm_t_abnormality_by_worst_grade(): Teal Module: Laboratory test results with highest grade post-baseline

tm_t_ancova(): Teal Module: ANCOVA Teal Module

tm_t_binary_outcome(): Teal Module: Binary Outcome Table

tm_t_coxreg(): Teal Module: Cox Regression Model

tm_t_events(): Teal Module: Events by Term

tm_t_events_by_grade(): Teal Module: Events by Grade

tm_t_events_patyear(): Teal module: Event rates adjusted for patient-years

tm_t_events_summary(): Teal Module: Adverse Events Summary

tm_t_exposure(): Teal module: Exposure Table for Risk management plan

tm_t_logistic(): Teal Module: Logistic Regression

tm_t_mult_events(): Teal Module: Multiple Events by Term

tm_t_pp_basic_info(): Teal Module: Patient Profile Basic Info Teal Module

tm_t_pp_laboratory(): Teal Module: Patient Profile Laboratory Teal Module

tm_t_pp_medical_history(): Teal Module: Patient Medical History Teal Module

tm_t_pp_prior_medication(): Teal Module: Patient Prior Medication Teal Module

tm_t_shift_by_arm(): Teal Module: Shift by Arm

tm_t_shift_by_arm_by_worst(): Teal Module: Shift by Arm by Worst

tm_t_shift_by_grade(): Teal Module: Grade Summary Table

tm_t_smq(): Teal Module: SMQ Table

tm_t_summary(): Teal Module: Summary of Variables

tm_t_summary_by(): Teal Module: Summarize Variables by Row Groups Module

tm_t_tte(): Teal Module: Time To Event Table Teal Module

Graphs

tm_g_barchart_simple(): Simple barchart plot that shows counts per category.

tm_g_ci(): Teal Module: Confidence Interval Plot (CIG01)

tm_g_forest_rsp(): Teal Module: Forest Response Plot teal module

tm_g_forest_tte(): Teal Module: Forest Survival Plot teal Module

tm_g_ipp(): Teal Module: Individual Patient Plot

tm_g_km(): Teal Module: Kaplan-Meier

tm_g_lineplot(): Teal Module: Line Plot

tm_g_pp_adverse_events(): Teal Module: Patient Profile Adverse Events Teal Module

tm_g_pp_patient_timeline(): Teal Module: Patient Profile Timeline Teal Module

tm_g_pp_therapy(): Teal Module: Patient Profile Therapy Teal Module

tm_g_pp_vitals(): Teal Module: Patient Profile Vitals Teal Module

General analyses

tm_a_gee(): Teal Module: Teal module for Generalized Estimating Equations (GEE) analysis

tm_a_mmrm(): Teal Module: Teal module for Mixed Model Repeated Measurements (MMRM) analysis

Patient profile modules

tm_g_pp_adverse_events(): Teal Module: Patient Profile Adverse Events Teal Module

tm_g_pp_patient_timeline(): Teal Module: Patient Profile Timeline Teal Module

tm_g_pp_therapy(): Teal Module: Patient Profile Therapy Teal Module

tm_g_pp_vitals(): Teal Module: Patient Profile Vitals Teal Module

tm_t_pp_basic_info(): Teal Module: Patient Profile Basic Info Teal Module

tm_t_pp_laboratory(): Teal Module: Patient Profile Laboratory Teal Module

tm_t_pp_medical_history(): Teal Module: Patient Medical History Teal Module

tm_t_pp_prior_medication(): Teal Module: Patient Prior Medication Teal Module

Helper functions

add_expr(): Expression List

bracket_expr(): Expressions in Brackets

call_concatenate(): Concatenate expressions via a binary operator

clean_description(): Clean a categorical variable descriptions

color_lab_values(): Mapping function for Laboratory Table

column_annotation_label(): Get full label, useful for annotating plots

cs_to_des_filter(): Convert choices_selected to data_extract_spec with only filter_spec

cs_to_des_select(): Convert choices_selected to data_extract_spec with only select_spec

cs_to_filter_spec(): Convert choices_selected to filter_spec

cs_to_select_spec(): Convert choices_selected to select_spec

extract_input(): Extracts html id for data_extract_ui

get_var_labels(): Get variable labels

h_concat_expr(): Expression Deparsing

is.cs_or_des(): Whether object is of class teal.transform::choices_selected() or teal.transform::data_extract_spec()

pipe_expr(): Expressions as a Pipeline

prepare_arm(): Expression: Arm Preparation

prepare_arm_levels(): Expression: Prepare Arm Levels

split_choices(): Split choices_selected objects with interactions into their component variables

split_col_expr(): Split-Column Expression

split_interactions(): Split interaction terms into their component variables

styled_expr(): Styled Code Printing

Data

Data included in the package.

tmc_ex_adsl tmc_ex_adae tmc_ex_adaette tmc_ex_adcm tmc_ex_adeg tmc_ex_adex tmc_ex_adlb tmc_ex_admh tmc_ex_adqs tmc_ex_adrs tmc_ex_adtte tmc_ex_advs: Simulated CDISC Data for Examples