Teal Module: Patient Profile Laboratory Teal Module — tm_t_pp

This teal module produces a patient profile laboratory table using ADaM datasets.

Usage

tm_t_pp_laboratory(
  label,
  dataname = "ADLB",
  parentname = "ADSL",
  patient_col = "USUBJID",
  timepoints = NULL,
  aval = NULL,
  avalu = NULL,
  param = NULL,
  paramcd = NULL,
  anrind = NULL,
  pre_output = NULL,
  post_output = NULL
)

Arguments

label: (character)
menu item label of the module in the teal app.
dataname: (character)
analysis data used in teal module.
parentname: (character)
parent analysis data used in teal module, usually this refers to ADSL.
patient_col: (character)
patient ID column to be used.
timepoints: (teal.transform::choices_selected() or teal.transform::data_extract_spec())
Time variable to be represented in the laboratory table.
aval: (teal.transform::choices_selected() or teal.transform::data_extract_spec())
AVAL column of the ADLB dataset.
avalu: (teal.transform::choices_selected() or teal.transform::data_extract_spec())
AVALU column of the ADLB dataset.
param: (teal.transform::choices_selected() or teal.transform::data_extract_spec())
PARAM column of the ADLB dataset.
paramcd: (teal.transform::choices_selected() or teal.transform::data_extract_spec())
PARAMCD column of the ADLB dataset.
anrind: (teal.transform::choices_selected() or teal.transform::data_extract_spec())
ANRIND column of the ADLB dataset with 3 possible levels "HIGH", "LOW" and "NORMAL".
pre_output: optional, (shiny.tag)
with text placed before the output to put the output into context. For example a title.
post_output: optional, (shiny.tag)
with text placed after the output to put the output into context. For example the shiny::helpText() elements are useful.

Examples

adsl <- tmc_ex_adsl
adlb <- tmc_ex_adlb

app <- init(
  data = cdisc_data(
    cdisc_dataset("ADSL", adsl),
    cdisc_dataset("ADLB", adlb)
  ),
  modules = modules(
    tm_t_pp_laboratory(
      label = "Vitals",
      dataname = "ADLB",
      patient_col = "USUBJID",
      paramcd = choices_selected(
        choices = variable_choices(adlb, "PARAMCD"),
        selected = "PARAMCD"
      ),
      param = choices_selected(
        choices = variable_choices(adlb, "PARAM"),
        selected = "PARAM"
      ),
      timepoints = choices_selected(
        choices = variable_choices(adlb, "ADY"),
        selected = "ADY"
      ),
      anrind = choices_selected(
        choices = variable_choices(adlb, "ANRIND"),
        selected = "ANRIND"
      ),
      aval = choices_selected(
        choices = variable_choices(adlb, "AVAL"),
        selected = "AVAL"
      ),
      avalu = choices_selected(
        choices = variable_choices(adlb, "AVALU"),
        selected = "AVALU"
      )
    )
  )
)
#> [INFO] 2023-05-31 23:41:46.7490 pid:3043 token:[] teal.modules.clinical Initializing tm_t_pp_laboratory
if (interactive()) {
  shinyApp(app$ui, app$server)
}