Package index • teal.modules.hermes

Package

teal.modules.hermes teal.modules.hermes-package: teal.modules.hermes Package

Utility Functions

h_assign_to_group_list() experimental: Helper Function For Group List Creation

h_collapse_levels() experimental: Helper Function for Collapsing of Factor Levels

h_extract_words() experimental: Helper Function to Extract Words

h_gene_data() experimental: Helper Function to Format Gene Choices

h_km_mae_to_adtte() experimental: Data Preprocessing for ADTTE Module

h_order_genes() experimental: Helper Function to Order Gene Choices

h_parse_genes() experimental: Helper Function to Parse Genes

h_update_gene_selection() experimental: Helper Function to Update Gene Selection

is_blank() experimental: Checking for Empty String

Shiny Modules

adtteSpecInput() experimental: Module Input for ADTTE Specification

adtteSpecServer() experimental: Module Server for ADTTE Specification

assaySpecInput() experimental: Module Input for Assay Specification

assaySpecServer() experimental: Module Server for Assay Specification

experimentSpecInput() experimental: Module Input for Experiment Specification

experimentSpecServer() experimental: Module Server for Experiment Specification

geneSpecInput() experimental: Module Input for Gene Signature Specification

geneSpecServer() experimental: Module Server for Gene Signature Specification

sampleVarSpecInput() experimental: Module Input for Sample Variable Specification

sampleVarSpecServer() experimental: Module Server for Sample Variable Specification

multiSampleVarSpecServer() experimental: Module Server for Specification of Multiple Sample Variables

Teal Module Functions

tm_g_barplot() ui_g_barplot() srv_g_barplot() sample_tm_g_barplot() experimental: Teal Module for RNA-seq Barplot

tm_g_boxplot() ui_g_boxplot() srv_g_boxplot() sample_tm_g_boxplot() experimental: Teal Module for RNA-seq Boxplot

tm_g_forest_tte() ui_g_forest_tte() srv_g_forest_tte() sample_tm_g_forest_tte() experimental: Teal Module for Survival Forest Plot

tm_g_km() ui_g_km() srv_g_km() sample_tm_g_km() experimental: Teal Module for Kaplan-Meier Plot

tm_g_pca() ui_g_pca() srv_g_pca() sample_tm_g_pca() experimental: Teal Module for PCA Analysis

tm_g_quality() ui_g_quality() srv_g_quality() sample_tm_g_quality() experimental: Teal Module for RNA-seq Quality Control

tm_g_scatterplot() ui_g_scatterplot() srv_g_scatterplot() sample_tm_g_scatterplot() experimental: Teal Module for RNA-seq Scatterplot

tm_g_volcanoplot() ui_g_volcanoplot() srv_g_volcanoplot() sample_tm_g_volcanoplot() experimental: Teal Module for RNA-seq Volcano Plot

Graph Functions

heatmap_plot() experimental: Correlation Heatmap Plot

top_gene_plot() experimental: Most Expressed Genes Plot

Assertions

assert_adtte_vars() experimental: Check for ADTTE Variables

check_reactive() assert_reactive() test_reactive() experimental: Check for Reactive Input

assert_summary_funs() experimental: Check for List of Summary Functions

check_tag() assert_tag() test_tag() expect_tag() experimental: Check for Shiny Tag

Validations

validate_gene_spec() experimental: Validation of Gene Specification

validate_n_levels() experimental: Validation of Number of Levels