This package contains a set of standard teal
modules to be used with CDISC
data in order to generate many of the standard outputs used in clinical trials.
These modules include, but are not limited to:
- Data visualizations:
- Forest plots (
tm_g_forest_rsp()
/tm_g_forest_tte()
) - Line plots (
tm_g_lineplot()
) - Kaplan-Meier plots (
tm_g_km()
) - …
- Forest plots (
- Statistical model fits:
- MMRM (
tm_a_mmrm()
) - Logistic regression (
tm_t_logistic()
) - Cox regression (
tm_t_coxreg()
) - …
- MMRM (
- Summary tables:
- Unique patients (
tm_t_summary()
) - Exposure across patients (
tm_t_exposure()
) - Change from baseline for parameters (
tm_t_summary_by()
) - …
- Unique patients (
- Patient-level profile modules:
- Table of basic information about chosen patient (
tm_t_pp_basic_info()
) - Plot of patient vitals over time (
tm_g_pp_vitals()
) - General timeline for individual patients (
tm_g_pp_patient_timeline()
) - …
- Table of basic information about chosen patient (
Most modules in the package are implemented using functions from the R package tern
in order to produce their output.
Please see the Teal Gallery and TLG Catalog for examples of shiny
apps created using modules from this package.
Installation
install.packages('teal.modules.clinical')
Alternatively, you might want to use the development version.
# install.packages("pak")
pak::pak("insightsengineering/teal.modules.clinical")
Usage
To understand how to use this package, please refer to the Getting Started article, which provides multiple examples of code implementation.
Getting help
If you encounter a bug or have a feature request, please file an issue. For questions, discussions, and staying up to date, please use the teal
channel in the pharmaverse
slack workspace.