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teal Module: Patient Profile Vitals Plot

Source: R/tm_g_pp_vitals.R
tm_g_pp_vitals.Rd

This module produces a patient profile vitals ggplot2::ggplot() type plot using ADaM datasets.

Usage

tm_g_pp_vitals(
  label,
  dataname = "ADVS",
  parentname = "ADSL",
  patient_col = "USUBJID",
  paramcd = NULL,
  aval = lifecycle::deprecated(),
  aval_var = NULL,
  xaxis = NULL,
  font_size = c(12L, 12L, 25L),
  plot_height = c(700L, 200L, 2000L),
  plot_width = NULL,
  pre_output = NULL,
  post_output = NULL,
  ggplot2_args = teal.widgets::ggplot2_args()
)

Arguments

label

(character)
menu item label of the module in the teal app.

dataname

(character)
analysis data used in teal module.

parentname

(character)
parent analysis data used in teal module, usually this refers to ADSL.

patient_col

(character)
name of patient ID variable.

paramcd

(teal.transform::choices_selected())
object with all available choices and preselected option for the parameter code variable from dataname.

aval

[Deprecated] Please use the aval_var argument instead.

aval_var

(teal.transform::choices_selected())
object with all available choices and pre-selected option for the analysis variable.

xaxis

(teal.transform::choices_selected())
object with all available choices and preselected option for the time variable from dataname to be put on the plot x-axis.

font_size

(numeric)
numeric vector of length 3 of current, minimum and maximum font size values.

plot_height

(numeric) optional
vector of length three with c(value, min, max). Specifies the height of the main plot and renders a slider on the plot to interactively adjust the plot height.

plot_width

(numeric) optional
vector of length three with c(value, min, max). Specifies the width of the main plot and renders a slider on the plot to interactively adjust the plot width.

pre_output

(shiny.tag) optional,
with text placed before the output to put the output into context. For example a title.

post_output

(shiny.tag) optional,
with text placed after the output to put the output into context. For example the shiny::helpText() elements are useful.

ggplot2_args

(ggplot2_args) optional
object created by teal.widgets::ggplot2_args() with settings for the module plot. The argument is merged with option teal.ggplot2_args and with default module arguments (hard coded in the module body). For more details, see the vignette: vignette("custom-ggplot2-arguments", package = "teal.widgets").

Value

a teal_module object.

Details

This plot supports horizontal lines for the following 6 PARAMCD levels when they are present in dataname: "SYSBP", "DIABP", "TEMP", "RESP", "OXYSAT".

Examples

library(nestcolor)

ADSL <- tmc_ex_adsl
ADVS <- tmc_ex_advs

app <- init(
  data = cdisc_data(
    ADSL = ADSL,
    ADVS = ADVS,
    code = "
      ADSL <- tmc_ex_adsl
      ADVS <- tmc_ex_advs
    "
  ),
  modules = modules(
    tm_g_pp_vitals(
      label = "Vitals",
      dataname = "ADVS",
      parentname = "ADSL",
      patient_col = "USUBJID",
      plot_height = c(600L, 200L, 2000L),
      paramcd = choices_selected(
        choices = variable_choices(ADVS, "PARAMCD"),
        selected = "PARAMCD"
      ),
      xaxis = choices_selected(
        choices = variable_choices(ADVS, "ADY"),
        selected = "ADY"
      ),
      aval_var = choices_selected(
        choices = variable_choices(ADVS, "AVAL"),
        selected = "AVAL"
      )
    )
  )
)
#> Initializing tm_g_pp_vitals
if (interactive()) {
  shinyApp(app$ui, app$server)
}