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Package

teal.modules.hermes teal.modules.hermes-package
teal.modules.hermes Package

Utility Functions

h_assign_to_group_list()
Helper Function For Group List Creation
h_collapse_levels()
Helper Function for Collapsing of Factor Levels
h_extract_words()
Helper Function to Extract Words
h_gene_data()
Helper Function to Format Gene Choices
h_km_mae_to_adtte()
Data Preprocessing for ADTTE Module
h_order_genes()
Helper Function to Order Gene Choices
h_parse_genes()
Helper Function to Parse Genes
h_update_gene_selection()
Helper Function to Update Gene Selection
is_blank()
Checking for Empty String

Shiny Modules

adtteSpecInput()
Module Input for ADTTE Specification
adtteSpecServer()
Module Server for ADTTE Specification
assaySpecInput()
Module Input for Assay Specification
assaySpecServer()
Module Server for Assay Specification
experimentSpecInput()
Module Input for Experiment Specification
experimentSpecServer()
Module Server for Experiment Specification
geneSpecInput()
Module Input for Gene Signature Specification
geneSpecServer()
Module Server for Gene Signature Specification
sampleVarSpecInput()
Module Input for Sample Variable Specification
sampleVarSpecServer()
Module Server for Sample Variable Specification
multiSampleVarSpecServer()
Module Server for Specification of Multiple Sample Variables

Teal Module Functions

Graph Functions

heatmap_plot()
Correlation Heatmap Plot
top_gene_plot()
Most Expressed Genes Plot

Assertions

assert_adtte_vars()
Check for ADTTE Variables
check_reactive() assert_reactive() test_reactive()
Check for Reactive Input
assert_summary_funs()
Check for List of Summary Functions
check_tag() assert_tag() test_tag() expect_tag()
Check for Shiny Tag

Validations

validate_gene_spec()
Validation of Gene Specification
validate_n_levels()
Validation of Number of Levels