Function reference • teal.modules.clinical

teal.modules.clinical-package teal.modules.clinical: teal Modules for Standard Clinical Outputs

Tables

tm_t_abnormality(): teal Module: Abnormality Summary Table

tm_t_abnormality_by_worst_grade(): teal Module: Laboratory test results with highest grade post-baseline

tm_t_ancova(): teal Module: ANCOVA Summary

tm_t_binary_outcome(): teal Module: Binary Outcome Table

tm_t_coxreg(): teal Module: Cox Regression Model

tm_t_events(): teal Module: Events by Term

tm_t_events_by_grade(): teal Module: Events by Grade

tm_t_events_patyear(): teal Module: Event Rates Adjusted for Patient-Years

tm_t_events_summary(): teal Module: Adverse Events Summary

tm_t_exposure(): teal Module: Exposure Table for Risk management plan

tm_t_logistic(): teal Module: Logistic Regression

tm_t_mult_events(): teal Module: Multiple Events by Term

tm_t_pp_basic_info(): teal Module: Patient Profile Basic Info

tm_t_pp_laboratory(): teal Module: Patient Profile Laboratory Table

tm_t_pp_medical_history(): teal Module: Patient Profile Medical History

tm_t_pp_prior_medication(): teal Module: Patient Profile Prior Medication

tm_t_shift_by_arm(): teal Module: Shift by Arm

tm_t_shift_by_arm_by_worst(): teal Module: Shift by Arm by Worst Analysis Indicator Level

tm_t_shift_by_grade(): teal Module: Grade Summary Table

tm_t_smq(): teal Module: Adverse Events Table by Standardized MedDRA Query

tm_t_summary(): teal Module: Summary of Variables

tm_t_summary_by(): teal Module: Summarize Variables by Row Groups

tm_t_tte(): teal Module: Time-To-Event Table

Graphs

tm_g_barchart_simple(): teal Module: Simple Bar Chart and Table of Counts per Category

tm_g_ci(): teal Module: Confidence Interval Plot

tm_g_forest_rsp(): teal Module: Forest Response Plot

tm_g_forest_tte(): teal Module: Forest Survival Plot

tm_g_ipp(): teal Module: Individual Patient Plots

tm_g_km(): teal Module: Kaplan-Meier Plot

tm_g_lineplot(): teal Module: Line Plot

tm_g_pp_adverse_events(): teal Module: Patient Profile Adverse Events Table and Plot

tm_g_pp_patient_timeline(): teal Module: Patient Profile Timeline Plot

tm_g_pp_therapy(): teal Module: Patient Profile Therapy Table and Plot

tm_g_pp_vitals(): teal Module: Patient Profile Vitals Plot

General analyses

tm_a_gee(): teal Module: Generalized Estimating Equations (GEE) analysis

tm_a_mmrm(): teal Module: Mixed Model Repeated Measurements (MMRM) Analysis

Patient profile modules

tm_g_pp_adverse_events(): teal Module: Patient Profile Adverse Events Table and Plot

tm_g_pp_patient_timeline(): teal Module: Patient Profile Timeline Plot

tm_g_pp_therapy(): teal Module: Patient Profile Therapy Table and Plot

tm_g_pp_vitals(): teal Module: Patient Profile Vitals Plot

tm_t_pp_basic_info(): teal Module: Patient Profile Basic Info

tm_t_pp_laboratory(): teal Module: Patient Profile Laboratory Table

tm_t_pp_medical_history(): teal Module: Patient Profile Medical History

tm_t_pp_prior_medication(): teal Module: Patient Profile Prior Medication

Helper functions

add_expr(): Expression List

as_num(): Parse text input to numeric vector

bracket_expr(): Expressions in Brackets

call_concatenate(): Concatenate expressions via a binary operator

clean_description(): Clean up categorical variable description

color_lab_values(): Mapping function for Laboratory Table

column_annotation_label(): Get full label, useful for annotating plots

cs_to_des_filter(): Convert choices_selected to data_extract_spec with only filter_spec

cs_to_des_select(): Convert choices_selected to data_extract_spec with only select_spec

cs_to_filter_spec(): Convert choices_selected to filter_spec

cs_to_select_spec(): Convert choices_selected to select_spec

default_total_label() set_default_total_label(): Default string for total column label

extract_input(): Extracts html id for data_extract_ui

get_var_labels(): Get variable labels

h_concat_expr(): Expression Deparsing

is.cs_or_des(): Whether object is of class teal.transform::choices_selected()

pipe_expr(): Expressions as a Pipeline

prepare_arm(): Expression: Arm Preparation

prepare_arm_levels(): Expression: Prepare Arm Levels

split_choices(): Split choices_selected objects with interactions into their component variables

split_col_expr(): Split-Column Expression

split_interactions(): Split interaction terms into their component variables

Data

Data included in the package.

tmc_ex_adsl tmc_ex_adae tmc_ex_adaette tmc_ex_adcm tmc_ex_adeg tmc_ex_adex tmc_ex_adlb tmc_ex_admh tmc_ex_adqs tmc_ex_adrs tmc_ex_adtte tmc_ex_advs: Simulated CDISC Data for Examples