Function reference
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teal.modules.clinical-package
teal.modules.clinical
teal
Modules for Standard Clinical Outputs
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tm_t_abnormality()
- teal Module: Abnormality Summary Table
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tm_t_abnormality_by_worst_grade()
- teal Module: Laboratory test results with highest grade post-baseline
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tm_t_ancova()
- teal Module: ANCOVA Summary
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tm_t_binary_outcome()
- teal Module: Binary Outcome Table
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tm_t_coxreg()
- teal Module: Cox Regression Model
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tm_t_events()
- teal Module: Events by Term
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tm_t_events_by_grade()
- teal Module: Events by Grade
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tm_t_events_patyear()
- teal Module: Event Rates Adjusted for Patient-Years
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tm_t_events_summary()
- teal Module: Adverse Events Summary
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tm_t_exposure()
- teal Module: Exposure Table for Risk management plan
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tm_t_logistic()
- teal Module: Logistic Regression
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tm_t_mult_events()
- teal Module: Multiple Events by Term
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tm_t_pp_basic_info()
- teal Module: Patient Profile Basic Info
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tm_t_pp_laboratory()
- teal Module: Patient Profile Laboratory Table
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tm_t_pp_medical_history()
- teal Module: Patient Profile Medical History
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tm_t_pp_prior_medication()
- teal Module: Patient Profile Prior Medication
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tm_t_shift_by_arm()
- teal Module: Shift by Arm
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tm_t_shift_by_arm_by_worst()
- teal Module: Shift by Arm by Worst Analysis Indicator Level
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tm_t_shift_by_grade()
- teal Module: Grade Summary Table
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tm_t_smq()
- teal Module: Adverse Events Table by Standardized MedDRA Query
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tm_t_summary()
- teal Module: Summary of Variables
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tm_t_summary_by()
- teal Module: Summarize Variables by Row Groups
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tm_t_tte()
- teal Module: Time-To-Event Table
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tm_g_barchart_simple()
- teal Module: Simple Bar Chart and Table of Counts per Category
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tm_g_ci()
- teal Module: Confidence Interval Plot
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tm_g_forest_rsp()
- teal Module: Forest Response Plot
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tm_g_forest_tte()
- teal Module: Forest Survival Plot
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tm_g_ipp()
- teal Module: Individual Patient Plots
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tm_g_km()
- teal Module: Kaplan-Meier Plot
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tm_g_lineplot()
- teal Module: Line Plot
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tm_g_pp_adverse_events()
- teal Module: Patient Profile Adverse Events Table and Plot
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tm_g_pp_patient_timeline()
- teal Module: Patient Profile Timeline Plot
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tm_g_pp_therapy()
- teal Module: Patient Profile Therapy Table and Plot
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tm_g_pp_vitals()
- teal Module: Patient Profile Vitals Plot
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tm_a_gee()
- teal Module: Generalized Estimating Equations (GEE) analysis
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tm_a_mmrm()
- teal Module: Mixed Model Repeated Measurements (MMRM) Analysis
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tm_g_pp_adverse_events()
- teal Module: Patient Profile Adverse Events Table and Plot
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tm_g_pp_patient_timeline()
- teal Module: Patient Profile Timeline Plot
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tm_g_pp_therapy()
- teal Module: Patient Profile Therapy Table and Plot
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tm_g_pp_vitals()
- teal Module: Patient Profile Vitals Plot
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tm_t_pp_basic_info()
- teal Module: Patient Profile Basic Info
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tm_t_pp_laboratory()
- teal Module: Patient Profile Laboratory Table
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tm_t_pp_medical_history()
- teal Module: Patient Profile Medical History
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tm_t_pp_prior_medication()
- teal Module: Patient Profile Prior Medication
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add_expr()
- Expression List
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as_num()
- Parse text input to numeric vector
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bracket_expr()
- Expressions in Brackets
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call_concatenate()
- Concatenate expressions via a binary operator
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clean_description()
- Clean up categorical variable description
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color_lab_values()
- Mapping function for Laboratory Table
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column_annotation_label()
- Get full label, useful for annotating plots
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cs_to_des_filter()
- Convert choices_selected to data_extract_spec with only filter_spec
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cs_to_des_select()
- Convert choices_selected to data_extract_spec with only select_spec
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cs_to_filter_spec()
- Convert choices_selected to filter_spec
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cs_to_select_spec()
- Convert choices_selected to select_spec
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default_total_label()
set_default_total_label()
- Default string for total column label
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extract_input()
- Extracts html id for
data_extract_ui
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get_var_labels()
- Get variable labels
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h_concat_expr()
- Expression Deparsing
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is.cs_or_des()
- Whether object is of class
teal.transform::choices_selected()
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pipe_expr()
- Expressions as a Pipeline
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prepare_arm()
- Expression: Arm Preparation
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prepare_arm_levels()
- Expression: Prepare Arm Levels
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split_choices()
- Split
choices_selected
objects with interactions into their component variables
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split_col_expr()
- Split-Column Expression
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split_interactions()
- Split interaction terms into their component variables
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tmc_ex_adsl
tmc_ex_adae
tmc_ex_adaette
tmc_ex_adcm
tmc_ex_adeg
tmc_ex_adex
tmc_ex_adlb
tmc_ex_admh
tmc_ex_adqs
tmc_ex_adrs
tmc_ex_adtte
tmc_ex_advs
- Simulated
CDISC
Data for Examples