teal Module: Patient Profile Prior Medication — tm_t_pp_prior

This module produces a patient profile prior medication report using ADaM datasets.

Usage

tm_t_pp_prior_medication(
  label,
  dataname = "ADCM",
  parentname = "ADSL",
  patient_col = "USUBJID",
  atirel = NULL,
  cmdecod = NULL,
  cmindc = NULL,
  cmstdy = NULL,
  pre_output = NULL,
  post_output = NULL
)

Arguments

label: (character)
menu item label of the module in the teal app.
dataname: (character)
analysis data used in teal module.
parentname: (character)
parent analysis data used in teal module, usually this refers to ADSL.
patient_col: (character)
name of patient ID variable.
atirel: (teal.transform::choices_selected())
object with all available choices and preselected option for the ATIREL variable from dataname.
cmdecod: (teal.transform::choices_selected())
object with all available choices and preselected option for the CMDECOD variable from dataname.
cmindc: (teal.transform::choices_selected())
object with all available choices and preselected option for the CMINDC variable from dataname.
cmstdy: (teal.transform::choices_selected())
object with all available choices and preselected option for the CMSTDY variable from dataname.
pre_output: optional, (shiny.tag)
with text placed before the output to put the output into context. For example a title.
post_output: optional, (shiny.tag)
with text placed after the output to put the output into context. For example the shiny::helpText() elements are useful.

Value

a teal_module object.

Examples

library(dplyr)

ADCM <- tmc_ex_adcm
ADSL <- tmc_ex_adsl %>% filter(USUBJID %in% ADCM$USUBJID)
ADCM$CMASTDTM <- ADCM$ASTDTM
ADCM$CMAENDTM <- ADCM$AENDTM
adcm_keys <- c("STUDYID", "USUBJID", "ASTDTM", "CMSEQ", "ATC1", "ATC2", "ATC3", "ATC4")

join_keys <- default_cdisc_join_keys[c("ADSL", "ADCM")]
join_keys["ADCM", "ADCM"] <- adcm_keys

app <- init(
  data = cdisc_data(
    ADSL = ADSL,
    ADCM = ADCM,
    code = "
      ADCM <- tmc_ex_adcm
      ADSL <- tmc_ex_adsl %>% filter(USUBJID %in% ADCM$USUBJID)
      ADCM$CMASTDTM <- ADCM$ASTDTM
      ADCM$CMAENDTM <- ADCM$AENDTM
    ",
    join_keys = join_keys
  ),
  modules = modules(
    tm_t_pp_prior_medication(
      label = "Prior Medication",
      dataname = "ADCM",
      parentname = "ADSL",
      patient_col = "USUBJID",
      atirel = choices_selected(
        choices = variable_choices(ADCM, "ATIREL"),
        selected = "ATIREL"
      ),
      cmdecod = choices_selected(
        choices = variable_choices(ADCM, "CMDECOD"),
        selected = "CMDECOD"
      ),
      cmindc = choices_selected(
        choices = variable_choices(ADCM, "CMINDC"),
        selected = "CMINDC"
      ),
      cmstdy = choices_selected(
        choices = variable_choices(ADCM, "ASTDY"),
        selected = "ASTDY"
      )
    )
  )
)
#> [INFO] 2024-02-26 01:42:45.2441 pid:1518 token:[] teal.modules.clinical Initializing tm_t_pp_prior_medication
if (interactive()) {
  shinyApp(app$ui, app$server)
}