Skip to contents
teal.modules.clinical-package teal.modules.clinical
teal Modules for Standard Clinical Outputs

Tables

tm_t_abnormality()
teal Module: Abnormality Summary Table
tm_t_abnormality_by_worst_grade()
teal Module: Laboratory test results with highest grade post-baseline
tm_t_ancova()
teal Module: ANCOVA Summary
tm_t_binary_outcome()
teal Module: Binary Outcome Table
tm_t_coxreg()
teal Module: Cox Regression Model
tm_t_events()
teal Module: Events by Term
tm_t_events_by_grade()
teal Module: Events by Grade
tm_t_events_patyear()
teal Module: Event Rates Adjusted for Patient-Years
tm_t_events_summary()
teal Module: Adverse Events Summary
tm_t_exposure()
teal Module: Exposure Table for Risk management plan
tm_t_logistic()
teal Module: Logistic Regression
tm_t_mult_events()
teal Module: Multiple Events by Term
tm_t_pp_basic_info()
teal Module: Patient Profile Basic Info
tm_t_pp_laboratory()
teal Module: Patient Profile Laboratory Table
tm_t_pp_medical_history()
teal Module: Patient Profile Medical History
tm_t_pp_prior_medication()
teal Module: Patient Profile Prior Medication
tm_t_shift_by_arm()
teal Module: Shift by Arm
tm_t_shift_by_arm_by_worst()
teal Module: Shift by Arm by Worst Analysis Indicator Level
tm_t_shift_by_grade()
teal Module: Grade Summary Table
tm_t_smq()
teal Module: Adverse Events Table by Standardized MedDRA Query
tm_t_summary()
teal Module: Summary of Variables
tm_t_summary_by()
teal Module: Summarize Variables by Row Groups
tm_t_tte()
teal Module: Time-To-Event Table

Graphs

tm_g_barchart_simple()
teal Module: Simple Bar Chart and Table of Counts per Category
tm_g_ci()
teal Module: Confidence Interval Plot
tm_g_forest_rsp()
teal Module: Forest Response Plot
tm_g_forest_tte()
teal Module: Forest Survival Plot
tm_g_ipp()
teal Module: Individual Patient Plots
tm_g_km()
teal Module: Kaplan-Meier Plot
tm_g_lineplot()
teal Module: Line Plot
tm_g_pp_adverse_events()
teal Module: Patient Profile Adverse Events Table and Plot
tm_g_pp_patient_timeline()
teal Module: Patient Profile Timeline Plot
tm_g_pp_therapy()
teal Module: Patient Profile Therapy Table and Plot
tm_g_pp_vitals()
teal Module: Patient Profile Vitals Plot

General analyses

tm_a_gee()
teal Module: Generalized Estimating Equations (GEE) analysis
tm_a_mmrm()
teal Module: Mixed Model Repeated Measurements (MMRM) Analysis

Patient profile modules

tm_g_pp_adverse_events()
teal Module: Patient Profile Adverse Events Table and Plot
tm_g_pp_patient_timeline()
teal Module: Patient Profile Timeline Plot
tm_g_pp_therapy()
teal Module: Patient Profile Therapy Table and Plot
tm_g_pp_vitals()
teal Module: Patient Profile Vitals Plot
tm_t_pp_basic_info()
teal Module: Patient Profile Basic Info
tm_t_pp_laboratory()
teal Module: Patient Profile Laboratory Table
tm_t_pp_medical_history()
teal Module: Patient Profile Medical History
tm_t_pp_prior_medication()
teal Module: Patient Profile Prior Medication

Helper functions

add_expr()
Expression List
as_num()
Parse text input to numeric vector
bracket_expr()
Expressions in Brackets
call_concatenate()
Concatenate expressions via a binary operator
clean_description()
Clean up categorical variable description
color_lab_values()
Mapping function for Laboratory Table
column_annotation_label()
Get full label, useful for annotating plots
cs_to_des_filter()
Convert choices_selected to data_extract_spec with only filter_spec
cs_to_des_select()
Convert choices_selected to data_extract_spec with only select_spec
cs_to_filter_spec()
Convert choices_selected to filter_spec
cs_to_select_spec()
Convert choices_selected to select_spec
default_total_label() set_default_total_label()
Default string for total column label
extract_input()
Extracts html id for data_extract_ui
get_var_labels()
Get variable labels
h_concat_expr()
Expression Deparsing
is.cs_or_des()
Whether object is of class teal.transform::choices_selected()
pipe_expr()
Expressions as a Pipeline
prepare_arm()
Expression: Arm Preparation
prepare_arm_levels()
Expression: Prepare Arm Levels
split_choices()
Split choices_selected objects with interactions into their component variables
split_col_expr()
Split-Column Expression
split_interactions()
Split interaction terms into their component variables

Data

Data included in the package.