Package index

Argument Conventions

The following dummy functions are unexported and used to document argument conventions in the framework.

lyt_args(): Layouting function argument conventions

constr_args(): Constructor argument conventions

compat_args(): Compatibility argument conventions

gen_args(): General argument conventions

sf_args(): Split function argument conventions

Layout and Tabulation

Functions for declaring layout and tabulation

qtable_layout() qtable(): Generalized frequency table

build_table(): Create a table from a layout and data

basic_table(): Layout with 1 column and zero rows

analyze(): Generate rows analyzing variables across columns

append_topleft(): Append a description to the 'top-left' materials for the layout

split_cols_by(): Declaring a column-split based on levels of a variable

add_colcounts(): Add the column population counts to the header

split_rows_by(): Add rows according to levels of a variable

summarize_row_groups(): Add a content row of summary counts

split_cols_by_multivar(): Associate multiple variables with columns

split_rows_by_multivar(): Associate multiple variables with rows

analyze_colvars(): Generate rows analyzing different variables across columns

split_cols_by_cuts() split_rows_by_cuts() split_cols_by_cutfun() split_cols_by_quartiles() split_rows_by_quartiles() split_rows_by_cutfun(): Split on static or dynamic cuts of the data

add_overall_col(): Add overall column

add_existing_table(): Add an already calculated table to the layout

table_inset() `table_inset<-`(): Access or (recursively) set table inset (from formatters)

Tabulation Utility Functions

Functions that are useful to be used with the analyze* functions.

in_rows(): Create multiple rows in analysis or summary functions

additional_fun_params: Additional parameters within analysis and content functions (afun/cfun)

simple_analysis(): Default tabulation

make_afun(): Create a custom analysis function wrapping an existing function

list_wrap_x() list_wrap_df(): Returns a function that coerces the return values of a function to a list

spl_context: .spl_context within analysis and split functions

spl_context_to_disp_path(): Translate spl_context to a path to display in error messages

counts_wpcts(): Analysis function to count levels of a factor with percentage of the column total

Split Functions

add_overall_level() select_all_levels add_combo_levels(): Add overall or combination levels to split groups

keep_split_levels() remove_split_levels() drop_split_levels() drop_and_remove_levels() reorder_split_levels() trim_levels_in_group(): Split functions

trim_levels_to_map(): Trim levels to map

custom_split_funs: Custom split functions

do_base_split(): Apply basic split (for use in custom split functions)

Custom Split Functions

make_split_fun(): Create a custom splitting function

drop_facet_levels(): Pre-processing function for use in make_split_fun

trim_levels_in_facets(): Trim levels of another variable from each facet (post-processing split step)

add_combo_facet() add_overall_facet(): Add a combination facet in post-processing

make_split_result() add_to_split_result(): Construct split result object

spl_variable(): Variable associated with a split

cell formatting.

format_rcell(): Format rcell objects

value_formats(): Value formats

Table Structure Information

nrow(<VTableTree>) ncol(<VTableNodeInfo>) dim(<VTableNodeInfo>): Table dimensions

row_paths() col_paths(): Get a list of table row/column paths

row_paths_summary() col_paths_summary(): Print row/column paths summary

table_structure(): Summarize table

table_shell() table_shell_str(): Table shells

make_row_df(): Make row layout summary data frames for use during pagination (from formatters)

make_col_df(): Column layout summary

Layout Structure Information

vars_in_layout(): List variables required by a pre-data table layout

coltree_structure(): Display column tree structure

Access and Modify

cell_values() value_at(): Retrieve cell values by row and column path

top_left() `top_left<-`(): Top left material

rbindl_rtables() rbind(<VTableNodeInfo>) rbind2(<VTableNodeInfo>,<ANY>): Row-bind TableTree and related objects

cbind_rtables(): Column-bind two TableTree objects

as.vector(<VTableTree>): Convert to a vector

`[<-`(<VTableTree>,<ANY>,<ANY>,<list>) `[`(<VTableTree>,<logical>,<logical>): Retrieve and assign elements of a TableTree

clear_indent_mods(): Clear all indent modifiers from a table

head() tail(): Head and tail methods

section_div() `section_div<-`() header_section_div() `header_section_div<-`() top_level_section_div() `top_level_section_div<-`(): Section dividers accessor and setter

colcount_visible() `colcount_visible<-`(): Value and Visibility of specific column counts by path

facet_colcount() `facet_colcount<-`(): Get or set column count for a facet in column space

`facet_colcounts_visible<-`(): Set visibility of column counts for a group of sibling facets

rm_all_colcounts(): Set all column counts at all levels of nesting to NA

Validating and Fixing Table Structure

validate_table_struct() assert_valid_table() experimental: Validate and assert valid table structure

sanitize_table_struct() experimental: Sanitize degenerate table structures

find_degen_struct() experimental: Find degenerate (sub)structures within a table

Sorting and Pruning

prune_table(): Recursively prune a TableTree

all_zero_or_na() all_zero() content_all_zeros_nas() prune_empty_level() prune_zeros_only() low_obs_pruner(): Trimming and pruning criteria

trim_rows(): Trim rows from a populated table without regard for table structure

sort_at_path(): Sorting a table at a specific path

cont_n_allcols() cont_n_onecol(): Score functions for sorting TableTrees

Compatibility Layer

These functions provide some backwards compatibility to the previous (pre 2021) rtables framework.

rtable() rtablel(): Create a table

rrow(): Create an rtable row

rcell() non_ref_rcell(): Cell value constructors

rheader(): Create a header

rrowl(): Create an rtable row from a vector or list of values

indent(): Change indentation of all rrows in an rtable

df_to_tt(): Create an ElementaryTable from a data.frame

Output Functions

These functions create ascii or html representations of the table

as_html(): Convert an rtable object to a shiny.tag HTML object

export_as_tsv() import_from_tsv(): Create enriched flat value table with paths

toString(<VTableTree>): Convert an rtable object to a string

get_formatted_cells() get_cell_aligns(): Get formatted cells

as_result_df() path_enriched_df(): Generate a result data frame

Utility Functions

utility functions

Viewer(): Display an rtable object in the Viewer pane in RStudio or in a browser

compare_rtables(): Compare two rtables

indent_string(): Indent strings

is_rtable(): Check if an object is a valid rtable

Pagination

Pagination related functionality

pag_tt_indices() paginate_table(): Pagination of a TableTree

make_row_df(): Make row layout summary data frames for use during pagination (from formatters)

make_col_df(): Column layout summary

TableTree Framework Accessor Functions

content_table() `content_table<-`(): Retrieve or set content table from a TableTree

tree_children() `tree_children<-`(): Retrieve or set the direct children of a tree-style object

collect_leaves(): Collect leaves of a TableTree

obj_avar() row_cells() `row_cells<-`() row_values() `row_values<-`(): Row attribute accessors

no_colinfo(): Exported for use in tern

clayout() `clayout<-`() col_info() `col_info<-`() coltree() col_exprs() col_counts() `col_counts<-`() col_total() `col_total<-`(): Column information/structure accessors

horizontal_sep() `horizontal_sep<-`(): Access or recursively set header-body separator for tables

table_inset() `table_inset<-`(): Access or (recursively) set table inset (from formatters)

main_title() `main_title<-`() subtitles() `subtitles<-`() page_titles() `page_titles<-`() main_footer() `main_footer<-`() prov_footer() `prov_footer<-`() all_footers() all_titles(): General title and footer accessors (from formatters)

top_left() `top_left<-`(): Top left material

obj_name() `obj_name<-`() obj_label() `obj_label<-`() obj_format() `obj_format<-`() obj_na_str() `obj_na_str<-`() obj_align() `obj_align<-`(): Label, name, and format accessor generics (from formatters)

TableTree Framework Constructors and S4 Classes

S4 classes and constructors

manual_cols(): Manual column declaration

CellValue(): Constructor for Cell Value

EmptyColInfo EmptyElTable EmptyRootSplit EmptyAllSplit: Empty table, column, split objects

ManualSplit(): Manually defined split

MultiVarSplit(): Split between two or more different variables

VarLevelSplit() VarLevWBaselineSplit(): Split on levels within a variable

AnalyzeVarSplit() AnalyzeColVarSplit() AnalyzeMultiVars(): Define a subset tabulation/analysis

make_static_cut_split() VarDynCutSplit(): Splits for cutting by values of a numeric variable

InstantiatedColumnInfo(): Instantiated column info

LabelRow() .tablerow() DataRow() ContentRow(): Row classes and constructors

ElementaryTable() TableTree(): TableTree classes

Pathing and insertion related functions

label_at_path() `label_at_path<-`(): Label at path

tt_at_path() `tt_at_path<-`(): Access or set table elements at specified path

insert_row_at_path(): Insert row at path

Referential Footnotes

Functions related to referential footnotes

row_footnotes() `row_footnotes<-`() cell_footnotes() `cell_footnotes<-`() col_fnotes_here() `col_fnotes_here<-`() col_footnotes() `col_footnotes<-`() ref_index() `ref_index<-`() ref_symbol() `ref_symbol<-`() ref_msg() `fnotes_at_path<-`(): Referential footnote accessors

update_ref_indexing(): Update footnote indices on a built table

Result Data Frame Functions

Functions for generating result data frames from rtables TableTree objects

as_result_df() path_enriched_df(): Generate a result data frame