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DTHT01 Table 1 (Default) Death Table.

Source: R/dtht01.R
dtht01.Rd

A description of the causes of death optionally with the breakdown of the OTHER category and/or post-study reporting of death.

Usage 

dtht01_main(
  adam_db,
  arm_var = "ACTARM",
  lbl_overall = NULL,
  other_category = FALSE,
  time_since_last_dose = FALSE,
  ...
)

dtht01_pre(adam_db, ...)

dtht01_post(tlg, prune_0 = TRUE, ...)

dtht01

Format

An object of class chevron_t of length 1.

Arguments

adam_db

(list of data.frames) object containing the ADaM datasets

arm_var

(string) variable used for column splitting

lbl_overall

(string) label used for overall column, if set to NULL the overall column is omitted

other_category

(flag) should the breakdown of the OTHER category be displayed.

time_since_last_dose

(flag) should the time to event information be displayed.

...

not used.

tlg

(TableTree, Listing or ggplot) object typically produced by a main function.

prune_0

(flag) remove 0 count rows

Value

the main function returns an rtables object.

the preprocessing function returns a list of data.frame.

the postprocessing function returns an rtables object or an ElementaryTable (null report).

Details

  • Numbers represent absolute numbers of subjects and fraction of N, or absolute numbers when specified.

  • Remove zero-count rows unless overridden with prune_0 = FALSE.

  • Does not include a total column by default.

Functions

  • dtht01_main(): Main TLG function

  • dtht01_pre(): Preprocessing

  • dtht01_post(): Postprocessing

Note

  • adam_db object must contain an adsl table with the columns "DTHFL", "DTHCAT" as well as LDDTHGR1 if time_since_last_dose is TRUE.

Examples 

run(dtht01, syn_data)
#>                            A: Drug X   B: Placebo   C: Combination
#>                             (N=15)       (N=15)         (N=15)    
#>   ————————————————————————————————————————————————————————————————
#>   Total number of deaths   2 (13.3%)   4 (26.7%)      3 (20.0%)   
#>   Primary Cause of Death                                          
#>     n                          2           4              3       
#>     Adverse Event          1 (50.0%)   2 (50.0%)      1 (33.3%)   
#>     Progressive Disease    1 (50.0%)       0          2 (66.7%)   
#>     Other                      0       2 (50.0%)          0       

run(dtht01, syn_data, other_category = TRUE, time_since_last_dose = TRUE)
#>                                                               A: Drug X   B: Placebo   C: Combination
#>                                                                (N=15)       (N=15)         (N=15)    
#>   ———————————————————————————————————————————————————————————————————————————————————————————————————
#>   Total number of deaths                                      2 (13.3%)   4 (26.7%)      3 (20.0%)   
#>   Primary Cause of Death                                                                             
#>     n                                                             2           4              3       
#>     Adverse Event                                             1 (50.0%)   2 (50.0%)      1 (33.3%)   
#>     Progressive Disease                                       1 (50.0%)       0          2 (66.7%)   
#>     Other                                                         0       2 (50.0%)          0       
#>       LOST TO FOLLOW UP                                           0        1 (50%)           0       
#>       SUICIDE                                                     0        1 (50%)           0       
#>   Days from last drug administration                                                                 
#>     n                                                             2           4              3       
#>     <=30                                                      2 (100%)    1 (25.0%)      2 (66.7%)   
#>     >30                                                           0       3 (75.0%)      1 (33.3%)   
#>   Primary cause by days from last study drug administration                                          
#>     <=30                                                                                             
#>       n                                                           2           1              2       
#>       Adverse Event                                           1 (50.0%)       0          1 (50.0%)   
#>       Progressive Disease                                     1 (50.0%)       0          1 (50.0%)   
#>       Other                                                       0        1 (100%)          0       
#>     >30                                                                                              
#>       n                                                           0           3              1       
#>       Adverse Event                                               0       2 (66.7%)          0       
#>       Progressive Disease                                         0           0           1 (100%)   
#>       Other                                                       0       1 (33.3%)          0