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AET10 Table 1 (Default) Most Common (xx%) Adverse Events Preferred Terms Table 1.

Source: R/aet10.R
aet10.Rd

The AET10 table Include Adverse Events occurring with user-specified threshold X% in at least one of the treatment groups. Standard table summarized by preferred term (PT). Order the data by total column frequency from most to least frequently reported PT (regardless of SOC).

Usage 

aet10_main(adam_db, arm_var = "ACTARM", lbl_overall = NULL, ...)

aet10_pre(adam_db, ...)

aet10_post(tlg, atleast = 0.05, ...)

aet10

Format

An object of class chevron_t of length 1.

Arguments

adam_db

(list of data.frames) object containing the ADaM datasets

arm_var

(string) variable used for column splitting

lbl_overall

(string) label used for overall column, if set to NULL the overall column is omitted

...

not used.

tlg

(TableTree, Listing or ggplot) object typically produced by a main function.

atleast

given cut-off in numeric format, default is 0.05

Value

the main function returns an rtables object

the preprocessing function returns a list of data.frame.

the postprocessing function returns an rtables object or an ElementaryTable (null report).

Details

  • Numbers represent absolute numbers of subject and fraction of N, or absolute number of event when specified.

  • Remove zero-count rows unless overridden with prune_0 = FALSE.

  • Split columns by arm.

  • Does not include a total column by default.

  • Sort Dictionary-Derived Code (AEDECOD) by highest overall frequencies.

  • Missing values in AEDECOD are labeled by No Coding Available.

Functions

  • aet10_main(): Main TLG function

  • aet10_pre(): Preprocessing

  • aet10_post(): Postprocessing

Note

  • adam_db object must contain an adae table with the columns "AEDECOD".

Examples 

run(aet10, syn_data)
#>                           A: Drug X   B: Placebo   C: Combination
#>   MedDRA Preferred Term    (N=15)       (N=15)         (N=15)    
#>   ———————————————————————————————————————————————————————————————
#>   dcd B.2.2.3.1           8 (53.3%)   6 (40.0%)      7 (46.7%)   
#>   dcd B.1.1.1.1           5 (33.3%)   6 (40.0%)      8 (53.3%)   
#>   dcd C.2.1.2.1           6 (40.0%)   4 (26.7%)      8 (53.3%)   
#>   dcd A.1.1.1.2           5 (33.3%)   6 (40.0%)      6 (40.0%)   
#>   dcd B.2.1.2.1           5 (33.3%)   6 (40.0%)      5 (33.3%)   
#>   dcd D.1.1.1.1           4 (26.7%)   4 (26.7%)      7 (46.7%)   
#>   dcd D.1.1.4.2           6 (40.0%)   2 (13.3%)      7 (46.7%)   
#>   dcd D.2.1.5.3           2 (13.3%)   5 (33.3%)      7 (46.7%)   
#>   dcd C.1.1.1.3           4 (26.7%)   4 (26.7%)      5 (33.3%)   
#>   dcd A.1.1.1.1           3 (20.0%)    1 (6.7%)      6 (40.0%)