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A major protocol deviations table with the number of subjects and the total number of Major Protocol Deviations Related to Epidemic/Pandemic sorted alphabetically and deviations name sorted by frequencies.

Usage

pdt02_1_main(
  adam_db,
  arm_var = "ARM",
  dvreas_var = "DVREAS",
  lbl_dvreas_var = "Primary Reason",
  dvterm_var = "DVTERM",
  lbl_dvterm_var = "Description",
  lbl_overall = NULL,
  deco = std_deco("pdt02_1"),
  ...
)

pdt02_1_lyt(
  arm_var,
  lbl_overall,
  dvreas_var,
  lbl_dvreas_var,
  dvterm_var,
  lbl_dvterm_var,
  deco
)

pdt02_1_pre(adam_db, dvreas_var = "DVREAS", dvterm_var = "DVTERM", ...)

pdt02_1_post(
  tlg,
  prune_0 = TRUE,
  dvreas_var = "DVREAS",
  dvterm_var = "DVTERM",
  ...
)

pdt02_1

Format

An object of class chevron_t of length 1.

Arguments

adam_db

(dm) object containing the ADaM datasets

arm_var

(string) variable used for column splitting

dvreas_var

(string) the variable defining the reason for deviation. By default DVREAS.

lbl_dvreas_var

(string) label for the variable defining the reason for deviation.

dvterm_var

(string) the variable defining the protocol deviation term. By default DVTERM.

lbl_dvterm_var

(string) label for the variable defining the protocol deviation term.

lbl_overall

(string) label used for overall column, if set to NULL the overall column is omitted

deco

(character) decoration with title, subtitles and main_footer content

...

not used.

tlg

(TableTree, Listing or ggplot) object typically produced by a main function.

prune_0

(flag) remove 0 count rows

Details

  • Data should be filtered for major protocol deviations related to epidemic/pandemic. (AEPRELFL == "Y" & DVCAT == "MAJOR").

  • Numbers represent absolute numbers of subjects and fraction of N, or absolute numbers when specified.

  • Remove zero-count rows unless overridden with prune_0 = FALSE.

  • Split columns by arm.

  • Does not include a total column by default.

  • Sort by deviation reason alphabetically and within deviation reason by decreasing total number of patients with the specific deviation term.

Functions

  • pdt02_1_main(): Main TLG function

  • pdt02_1_lyt(): Layout

  • pdt02_1_pre(): Preprocessing

  • pdt02_1_post(): Postprocessing

Note

  • adam_db object must contain an addv table with the columns specified in dvreas_var and dvterm_var as well as "DVSEQ".

Examples

run(pdt02_1, syn_data)
#>   Primary Reason                                                                                     A: Drug X   B: Placebo   C: Combination
#>     Description                                                                                       (N=134)     (N=134)        (N=132)    
#>   ——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————
#>   Total number of patients with at least one major protocol deviation related to epidemic/pandemic   9 (6.7%)     2 (1.5%)       5 (3.8%)   
#>   Total number of major protocol deviations related to epidemic/pandemic                                 9           2              6       
#>   Site action due to epidemic/pandemic                                                               9 (6.7%)     2 (1.5%)       5 (3.8%)   
#>     Significant deviation from planned dose                                                          3 (2.2%)     1 (0.7%)       2 (1.5%)   
#>     Failure to sign updated ICF within two visits                                                    2 (1.5%)     1 (0.7%)       1 (0.8%)   
#>     Dose missed or significantly out of window                                                       2 (1.5%)        0           1 (0.8%)   
#>     Missed 2 or more efficacy assessments                                                            2 (1.5%)        0           1 (0.8%)