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MNG01 Graph 1 (Default) Mean Plot 1.

mng01_1.Rd

Overview of a summary statistics across time and arm for a selected data set.

Usage

mng01_1_main(
  adam_db,
  dataset = "adlb",
  x_var = "AVISIT",
  y_var = "AVAL",
  y_name = "PARAM",
  y_unit = NA,
  arm_var = "ACTARM",
  center_fun = c("mean", "median"),
  interval_fun = c("mean_ci", "mean_sei", "mean_sdi", "median_ci", "quantiles", "range"),
  show_table = TRUE,
  jitter = TRUE,
  show_n = TRUE,
  show_h_grid = TRUE,
  show_v_grid = FALSE,
  legend_pos = "top",
  line_col = as.list(nestcolor::color_palette()),
  ...
)

mng01_1_pre(adam_db, dataset, x_var = "AVISIT", ...)

mng01_1_post(tlg, ...)

mng01_1

Format

An object of class chevron_g of length 1.

Arguments

adam_db

(dm) object containing the ADaM datasets

dataset

(string) the name of a table in the adam_db object.

x_var

(character) the name of a column in the dataset to represent on the x-axis.

y_var

(string) the name of the variable to be represented on the y-axis.

y_name

(string) the variable name for y. Used for plot's subtitle.

y_unit

(string) the name of the variable with the units of y. Used for plot's subtitle. if NA, only y_name is displayed as subtitle.

arm_var

(character) variable used for column splitting

center_fun

(string) the function to compute the estimate value.

interval_fun

(string) the function defining the crossbar range.

show_table

(flag) should the summary statistic table be displayed.

jitter

(flag) should data point be slightly spread on the x-axis.

show_n

(flag) should the number of observation be displayed int the table.

show_h_grid

(flag) should horizontal grid be displayed.

show_v_grid

(flag) should vertical grid be displayed.

legend_pos

(string) the position of the legend.

line_col

(list) describing the colors to use for the lines or a named list associating values of arm_var with color names.

...

not used.

tlg

(TableTree, Listing or ggplot) object typically produced by a main function.

Value

a list of ggplot objects.

Details

  • No overall value.

  • Preprocessing filters for ANL01FL in the selected data set.

Functions

  • mng01_1_main(): Main TLG Function

  • mng01_1_pre(): Preprocessing

  • mng01_1_post(): Postprocessing

Note

  • adam_db object must contain the table specified by dataset with the columns specified by x_var, y_var, y_name, y_unit and arm_var.

Examples

library(dm)
library(dplyr)
#> 
#> Attaching package: ‘dplyr’
#> The following objects are masked from ‘package:stats’:
#> 
#>     filter, lag
#> The following objects are masked from ‘package:base’:
#> 
#>     intersect, setdiff, setequal, union

col <- c(
  "A: Drug X" = "black",
  "B: Placebo" = "blue",
  "C: Combination" = "gray"
)

run(mng01_1, syn_data, dataset = "adlb", line_col = col)
#> $`Alanine Aminotransferase Measurement`

#> 
#> $`C-Reactive Protein Measurement`

#> 
#> $`Immunoglobulin A Measurement`

#> 
#> attr(,"class")
#> [1] "gg_list" "list"