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MHT01 Table 1 (Default) Medical History Table 1.

mht01_1.Rd

The MHT01 table provides an overview of the subjects medical history by SOC and Preferred Term.

Usage

mht01_1_main(
  adam_db,
  arm_var = "ARM",
  lbl_overall = NULL,
  lbl_mhbodsys = "MedDRA System Organ Class",
  lbl_mhdecod = "MedDRA Preferred Term",
  deco = std_deco("MHT01"),
  ...
)

mht01_1_lyt(arm_var, lbl_overall, lbl_mhbodsys, lbl_mhdecod, deco)

mht01_1_pre(adam_db, ...)

mht01_1_post(tlg, prune_0 = TRUE, ...)

mht01_1

Format

An object of class chevron_t of length 1.

Arguments

adam_db

(dm) object containing the ADaM datasets

arm_var

(character) variable used for column splitting

lbl_overall

(character) label used for overall column, if set to NULL the overall column is omitted

lbl_mhbodsys

(string) text label for MHBODSYS. If NULL, the value of the argument defaults to the label of the corresponding column in the admh table.

lbl_mhdecod

(string) text label for MHDECOD. If NULL, the value of the argument defaults to the label of the corresponding column in the admh table.

deco

(character) decoration with title, subtitles and main_footer content

...

not used.

tlg

(TableTree, Listing or ggplot) object typically produced by a main function.

prune_0

(logical) remove 0 count rows

Details

  • Numbers represent absolute numbers of patients and fraction of N, or absolute number of event when specified.

  • Remove zero-count rows unless overridden with prune_0 = FALSE.

  • Split columns by arm.

  • Does not include a total column by default.

  • Order by body system alphabetically and within body system and medical condition by decreasing total number of patients with the specific condition.

Functions

  • mht01_1_main(): Main TLG function

  • mht01_1_lyt(): Layout

  • mht01_1_pre(): Preprocessing

  • mht01_1_post(): Postprocessing

Note

  • adam_db object must contain an admh table with columns "MHBODSYS" and "MHDECOD".

Examples

run(mht01_1, syn_data)
#>   MedDRA System Organ Class                                 A: Drug X    B: Placebo    C: Combination
#>     MedDRA Preferred Term                                    (N=134)       (N=134)        (N=132)    
#>   ———————————————————————————————————————————————————————————————————————————————————————————————————
#>   Total number of patients with at least one condition     122 (91.0%)   123 (91.8%)    120 (90.9%)  
#>   Total number of conditions                                   609           622            703      
#>   cl A                                                                                               
#>     Total number of patients with at least one condition   78 (58.2%)    75 (56.0%)      89 (67.4%)  
#>     Total number of conditions                                 132           130            160      
#>     trm A_1/2                                              50 (37.3%)    45 (33.6%)      63 (47.7%)  
#>     trm A_2/2                                              48 (35.8%)    48 (35.8%)      50 (37.9%)  
#>   cl B                                                                                               
#>     Total number of patients with at least one condition   96 (71.6%)    89 (66.4%)      97 (73.5%)  
#>     Total number of conditions                                 185           198            205      
#>     trm B_3/3                                              48 (35.8%)    54 (40.3%)      51 (38.6%)  
#>     trm B_2/3                                              49 (36.6%)    44 (32.8%)      52 (39.4%)  
#>     trm B_1/3                                              47 (35.1%)    49 (36.6%)      43 (32.6%)  
#>   cl C                                                                                               
#>     Total number of patients with at least one condition   67 (50.0%)    75 (56.0%)      79 (59.8%)  
#>     Total number of conditions                                 103           116            129      
#>     trm C_2/2                                              35 (26.1%)    48 (35.8%)      55 (41.7%)  
#>     trm C_1/2                                              43 (32.1%)    46 (34.3%)      43 (32.6%)  
#>   cl D                                                                                               
#>     Total number of patients with at least one condition   96 (71.6%)    90 (67.2%)      98 (74.2%)  
#>     Total number of conditions                                 189           178            209      
#>     trm D_3/3                                              47 (35.1%)    58 (43.3%)      57 (43.2%)  
#>     trm D_1/3                                              50 (37.3%)    42 (31.3%)      51 (38.6%)  
#>     trm D_2/3                                              48 (35.8%)    42 (31.3%)      50 (37.9%)