Comprehensive data integration function for teal applications
Source: R/teal_report-class.R
teal_report.Rd![[Stable]](figures/lifecycle-stable.svg)
Initializes a reportable data for teal application.
Arguments
- ...
any number of objects (presumably data objects) provided as
name = valuepairs.- teal_card
(
teal_card) object containing the report content.- code
-
(
character,language) optional code to reproduce the datasets provided in.... Note this code is not executed and theteal_datamay not be reproducibleUse
verify()to verify code reproducibility. - join_keys
(
join_keysor singlejoin_key_set) optional object with datasets column names used for joining. If empty then no joins between pairs of objects.- x
(
qenvorteal_data) object to convert toteal_report.
Examples
# Initialize teal_report with existing h2 header
report <- teal_report(teal_card = teal_card("## Analysis Report"))
# Use within() to execute code and add code-chunk
report <- within(report, {
data <- iris
summary_stats <- summary(data)
})
# Access objects created within the report
report$data
#> Sepal.Length Sepal.Width Petal.Length Petal.Width Species
#> 1 5.1 3.5 1.4 0.2 setosa
#> 2 4.9 3.0 1.4 0.2 setosa
#> 3 4.7 3.2 1.3 0.2 setosa
#> 4 4.6 3.1 1.5 0.2 setosa
#> 5 5.0 3.6 1.4 0.2 setosa
#> 6 5.4 3.9 1.7 0.4 setosa
#> 7 4.6 3.4 1.4 0.3 setosa
#> 8 5.0 3.4 1.5 0.2 setosa
#> 9 4.4 2.9 1.4 0.2 setosa
#> 10 4.9 3.1 1.5 0.1 setosa
#> 11 5.4 3.7 1.5 0.2 setosa
#> 12 4.8 3.4 1.6 0.2 setosa
#> 13 4.8 3.0 1.4 0.1 setosa
#> 14 4.3 3.0 1.1 0.1 setosa
#> 15 5.8 4.0 1.2 0.2 setosa
#> 16 5.7 4.4 1.5 0.4 setosa
#> 17 5.4 3.9 1.3 0.4 setosa
#> 18 5.1 3.5 1.4 0.3 setosa
#> 19 5.7 3.8 1.7 0.3 setosa
#> 20 5.1 3.8 1.5 0.3 setosa
#> 21 5.4 3.4 1.7 0.2 setosa
#> 22 5.1 3.7 1.5 0.4 setosa
#> 23 4.6 3.6 1.0 0.2 setosa
#> 24 5.1 3.3 1.7 0.5 setosa
#> 25 4.8 3.4 1.9 0.2 setosa
#> 26 5.0 3.0 1.6 0.2 setosa
#> 27 5.0 3.4 1.6 0.4 setosa
#> 28 5.2 3.5 1.5 0.2 setosa
#> 29 5.2 3.4 1.4 0.2 setosa
#> 30 4.7 3.2 1.6 0.2 setosa
#> 31 4.8 3.1 1.6 0.2 setosa
#> 32 5.4 3.4 1.5 0.4 setosa
#> 33 5.2 4.1 1.5 0.1 setosa
#> 34 5.5 4.2 1.4 0.2 setosa
#> 35 4.9 3.1 1.5 0.2 setosa
#> 36 5.0 3.2 1.2 0.2 setosa
#> 37 5.5 3.5 1.3 0.2 setosa
#> 38 4.9 3.6 1.4 0.1 setosa
#> 39 4.4 3.0 1.3 0.2 setosa
#> 40 5.1 3.4 1.5 0.2 setosa
#> 41 5.0 3.5 1.3 0.3 setosa
#> 42 4.5 2.3 1.3 0.3 setosa
#> 43 4.4 3.2 1.3 0.2 setosa
#> 44 5.0 3.5 1.6 0.6 setosa
#> 45 5.1 3.8 1.9 0.4 setosa
#> 46 4.8 3.0 1.4 0.3 setosa
#> 47 5.1 3.8 1.6 0.2 setosa
#> 48 4.6 3.2 1.4 0.2 setosa
#> 49 5.3 3.7 1.5 0.2 setosa
#> 50 5.0 3.3 1.4 0.2 setosa
#> 51 7.0 3.2 4.7 1.4 versicolor
#> 52 6.4 3.2 4.5 1.5 versicolor
#> 53 6.9 3.1 4.9 1.5 versicolor
#> 54 5.5 2.3 4.0 1.3 versicolor
#> 55 6.5 2.8 4.6 1.5 versicolor
#> 56 5.7 2.8 4.5 1.3 versicolor
#> 57 6.3 3.3 4.7 1.6 versicolor
#> 58 4.9 2.4 3.3 1.0 versicolor
#> 59 6.6 2.9 4.6 1.3 versicolor
#> 60 5.2 2.7 3.9 1.4 versicolor
#> 61 5.0 2.0 3.5 1.0 versicolor
#> 62 5.9 3.0 4.2 1.5 versicolor
#> 63 6.0 2.2 4.0 1.0 versicolor
#> 64 6.1 2.9 4.7 1.4 versicolor
#> 65 5.6 2.9 3.6 1.3 versicolor
#> 66 6.7 3.1 4.4 1.4 versicolor
#> 67 5.6 3.0 4.5 1.5 versicolor
#> 68 5.8 2.7 4.1 1.0 versicolor
#> 69 6.2 2.2 4.5 1.5 versicolor
#> 70 5.6 2.5 3.9 1.1 versicolor
#> 71 5.9 3.2 4.8 1.8 versicolor
#> 72 6.1 2.8 4.0 1.3 versicolor
#> 73 6.3 2.5 4.9 1.5 versicolor
#> 74 6.1 2.8 4.7 1.2 versicolor
#> 75 6.4 2.9 4.3 1.3 versicolor
#> 76 6.6 3.0 4.4 1.4 versicolor
#> 77 6.8 2.8 4.8 1.4 versicolor
#> 78 6.7 3.0 5.0 1.7 versicolor
#> 79 6.0 2.9 4.5 1.5 versicolor
#> 80 5.7 2.6 3.5 1.0 versicolor
#> 81 5.5 2.4 3.8 1.1 versicolor
#> 82 5.5 2.4 3.7 1.0 versicolor
#> 83 5.8 2.7 3.9 1.2 versicolor
#> 84 6.0 2.7 5.1 1.6 versicolor
#> 85 5.4 3.0 4.5 1.5 versicolor
#> 86 6.0 3.4 4.5 1.6 versicolor
#> 87 6.7 3.1 4.7 1.5 versicolor
#> 88 6.3 2.3 4.4 1.3 versicolor
#> 89 5.6 3.0 4.1 1.3 versicolor
#> 90 5.5 2.5 4.0 1.3 versicolor
#> 91 5.5 2.6 4.4 1.2 versicolor
#> 92 6.1 3.0 4.6 1.4 versicolor
#> 93 5.8 2.6 4.0 1.2 versicolor
#> 94 5.0 2.3 3.3 1.0 versicolor
#> 95 5.6 2.7 4.2 1.3 versicolor
#> 96 5.7 3.0 4.2 1.2 versicolor
#> 97 5.7 2.9 4.2 1.3 versicolor
#> 98 6.2 2.9 4.3 1.3 versicolor
#> 99 5.1 2.5 3.0 1.1 versicolor
#> 100 5.7 2.8 4.1 1.3 versicolor
#> 101 6.3 3.3 6.0 2.5 virginica
#> 102 5.8 2.7 5.1 1.9 virginica
#> 103 7.1 3.0 5.9 2.1 virginica
#> 104 6.3 2.9 5.6 1.8 virginica
#> 105 6.5 3.0 5.8 2.2 virginica
#> 106 7.6 3.0 6.6 2.1 virginica
#> 107 4.9 2.5 4.5 1.7 virginica
#> 108 7.3 2.9 6.3 1.8 virginica
#> 109 6.7 2.5 5.8 1.8 virginica
#> 110 7.2 3.6 6.1 2.5 virginica
#> 111 6.5 3.2 5.1 2.0 virginica
#> 112 6.4 2.7 5.3 1.9 virginica
#> 113 6.8 3.0 5.5 2.1 virginica
#> 114 5.7 2.5 5.0 2.0 virginica
#> 115 5.8 2.8 5.1 2.4 virginica
#> 116 6.4 3.2 5.3 2.3 virginica
#> 117 6.5 3.0 5.5 1.8 virginica
#> 118 7.7 3.8 6.7 2.2 virginica
#> 119 7.7 2.6 6.9 2.3 virginica
#> 120 6.0 2.2 5.0 1.5 virginica
#> 121 6.9 3.2 5.7 2.3 virginica
#> 122 5.6 2.8 4.9 2.0 virginica
#> 123 7.7 2.8 6.7 2.0 virginica
#> 124 6.3 2.7 4.9 1.8 virginica
#> 125 6.7 3.3 5.7 2.1 virginica
#> 126 7.2 3.2 6.0 1.8 virginica
#> 127 6.2 2.8 4.8 1.8 virginica
#> 128 6.1 3.0 4.9 1.8 virginica
#> 129 6.4 2.8 5.6 2.1 virginica
#> 130 7.2 3.0 5.8 1.6 virginica
#> 131 7.4 2.8 6.1 1.9 virginica
#> 132 7.9 3.8 6.4 2.0 virginica
#> 133 6.4 2.8 5.6 2.2 virginica
#> 134 6.3 2.8 5.1 1.5 virginica
#> 135 6.1 2.6 5.6 1.4 virginica
#> 136 7.7 3.0 6.1 2.3 virginica
#> 137 6.3 3.4 5.6 2.4 virginica
#> 138 6.4 3.1 5.5 1.8 virginica
#> 139 6.0 3.0 4.8 1.8 virginica
#> 140 6.9 3.1 5.4 2.1 virginica
#> 141 6.7 3.1 5.6 2.4 virginica
#> 142 6.9 3.1 5.1 2.3 virginica
#> 143 5.8 2.7 5.1 1.9 virginica
#> 144 6.8 3.2 5.9 2.3 virginica
#> 145 6.7 3.3 5.7 2.5 virginica
#> 146 6.7 3.0 5.2 2.3 virginica
#> 147 6.3 2.5 5.0 1.9 virginica
#> 148 6.5 3.0 5.2 2.0 virginica
#> 149 6.2 3.4 5.4 2.3 virginica
#> 150 5.9 3.0 5.1 1.8 virginica
report$summary_stats
#> Sepal.Length Sepal.Width Petal.Length Petal.Width
#> Min. :4.300 Min. :2.000 Min. :1.000 Min. :0.100
#> 1st Qu.:5.100 1st Qu.:2.800 1st Qu.:1.600 1st Qu.:0.300
#> Median :5.800 Median :3.000 Median :4.350 Median :1.300
#> Mean :5.843 Mean :3.057 Mean :3.758 Mean :1.199
#> 3rd Qu.:6.400 3rd Qu.:3.300 3rd Qu.:5.100 3rd Qu.:1.800
#> Max. :7.900 Max. :4.400 Max. :6.900 Max. :2.500
#> Species
#> setosa :50
#> versicolor:50
#> virginica :50
#>
#>
#>
# within() automatically captures code and outputs
report <- within(report, {
head(iris)
})
# Add arbitrary markdown content to the card
teal_card(report) <- c(
teal_card(report),
teal_card("### Conclusion", "The analysis is complete.")
)
# View the generated card with code chunks
teal_card(report)
#> $`6f80446f`
#> [1] "## Analysis Report"
#>
#> $daa17b9e
#> [1] "data <- iris"
#> attr(,"params")
#> list()
#> attr(,"lang")
#> [1] "R"
#> attr(,"class")
#> [1] "code_chunk"
#>
#> $`4bde81ba`
#> [1] "summary_stats <- summary(data)"
#> attr(,"params")
#> list()
#> attr(,"lang")
#> [1] "R"
#> attr(,"class")
#> [1] "code_chunk"
#>
#> $`518af40a`
#> [1] "head(iris)"
#> attr(,"params")
#> list()
#> attr(,"lang")
#> [1] "R"
#> attr(,"class")
#> [1] "code_chunk"
#>
#> $`84cca6b7`
#> [[1]]
#> Sepal.Length Sepal.Width Petal.Length Petal.Width Species
#> 1 5.1 3.5 1.4 0.2 setosa
#> 2 4.9 3.0 1.4 0.2 setosa
#> 3 4.7 3.2 1.3 0.2 setosa
#> 4 4.6 3.1 1.5 0.2 setosa
#> 5 5.0 3.6 1.4 0.2 setosa
#> 6 5.4 3.9 1.7 0.4 setosa
#>
#> attr(,"class")
#> [1] "chunk_output"
#>
#> $`620bb3b6`
#> [1] "### Conclusion"
#>
#> $b98c472e
#> [1] "The analysis is complete."
#>
#> attr(,"class")
#> [1] "teal_card"
#> attr(,"metadata")
#> list()
# View report in HTML format
tools::toHTML(report)
Analysis Report
data <- iris
summary_stats <- summary(data)
head(iris)
Sepal.Length
Sepal.Width
Petal.Length
Petal.Width
Species
1
5.1
3.5
1.4
0.2
setosa
2
4.9
3
1.4
0.2
setosa
3
4.7
3.2
1.3
0.2
setosa
4
4.6
3.1
1.5
0.2
setosa
5
5
3.6
1.4
0.2
setosa
6
5.4
3.9
1.7
0.4
setosa
Conclusion
The analysis is complete.
if (interactive()) {
# Render the report to various formats
render(report, output_format = rmarkdown::html_document())
render(report, output_format = rmarkdown::pdf_document())
}