Changelog

Source: NEWS.md

osprey 0.1.16

Miscellaneous

• Removed scda package dependency from examples.
• Updated deprecated argument specification in calls to guides.

osprey 0.1.15

Enhancements

• Implemented nestcolor with slight refactoring to g_events_term_id, g_heat_bygrade, g_patient_profile, g_swimlane, and g_waterfall. Added nestcolor in examples without custom color manuals.
• Updated installation instructions in the README.

Fixes

• Fixed a failure in g_patient_profile example.

osprey 0.1.14

Miscellaneous

• Added a template to the pkgdown site.
• Moved tern from imports into suggests; it is now only required for the function grobs2pdf.
• Removed the dependency on purrr.

osprey 0.1.13

Miscellaneous

• Removed rtables dependency.
• Functions from imported packages are now fully specified.

osprey 0.1.12

Enhancements

• Modified g_swimlane plot to expand its y-axis range based on vertical line inputs.

Breaking changes

• Renamed ylab, yref_line and ytick_at arguments to xlab, xref_line and xtick_at for g_swimlane as they refer to the x not y axis.

Miscellaneous

• Updated R version requirement to R >= 3.6.
• Removed dependency on test.nest package.
• Removed dependency on utils.nest package and replaced its functions with equivalents from the checkmate package.

osprey 0.1.11

• Updated LICENCE and README with new package references.
• Fixed the sort_by issue in g_butterfly.
• Update example and tests using scda synthetic data to replace random.cdisc.data.
• Added error_on_lint: TRUE to .lintr.
• Removed unneeded importFrom statements.
• Fixed bug in g_swimlane that incorrectly orders the legend in certain scenarios.

osprey 0.1.10

• Updated and cleaned up package internals.

osprey 0.1.9

• Added new plot function Heatmap by Grade Plot g_heat_bygrade.
• Added new plot function Adverse Event Category Plot g_ae_sub.

osprey 0.1.8

Miscellaneous

• Set up a .lintr configuration file.
• Remove NA when calculating max_day in the example.

osprey 0.1.7

Bug fixes

• Fixed the issue in g_waterfall with simultaneous plot facet and annotation labels.
• Fixed g_events_term_id for the case when no data exists fora given treatment arm and a given term are given.

Miscellaneous

• The right_flag and left_flag arguments of g_butterfly should now be logical vectors instead of integers (1/0).
• Retired four table functions due to duplicated functionalities in tern:
  • t_ae_oview: AE overview summary table.
  • t_ae: AE summary table by preferred terms.
  • t_ae_ctc: AE summary table by highest NCI-CTCAE grade.
  • t_ds: Disposition table.

osprey 0.1.6

• Refactored g_events_term_id to use dplyr and tidyr functions over data.table.

osprey 0.1.5

• Added new plot functions:
  • Events by term plot g_events_term_id, which can be used to plot events (AE) by terms or AE overview.
  • Patient profile plot g_patient_profile.

osprey 0.1.4

• Work on g_swimlane, g_waterfall, t_ae_ctct_v2, and utils.

osprey 0.1.3

• Force grade_levels argument in t_ae_ctc_v2 function to be a factor.

osprey 0.1.2

• Refactor due to changes in utils.nest.

osprey 0.1.1

• Refactoring package according to the NEST standards:
  • Including test.nest tests.
  • Cleaning dependencies.
  • Fix tm_g_butterfly faceting error.
  • Add sorting by right or left wing.
  • Adding g_waterfall.

osprey 0.1.0

• First versioned release of osprey package, which include the following seven new TLG analysis functions:
  • AE overview summary table.
  • AE summary table by preferred terms.
  • AE summary table by highest NCI-CTCAE grade.
  • AE butterfly plot.
  • Disposition table.
  • Swimlane plot.
  • Spiderplot.
• Few utility functions for working in BCE:
  • Function to quickly load snapshot data from BCE.
  • Function to output graphic objects in PDF.
  • Formatting graphic objects and outputting PDF that is IDM-compatible.