AEL01_NOLLT Listing 1 (Default) Glossary of Preferred Terms and Investigator-Specified Terms.

AEL01_NOLLT Listing 1 (Default) Glossary of Preferred Terms and Investigator-Specified Terms.

Usage

ael01_nollt_main(
  adam_db,
  dataset = "adae",
  key_cols = c("AEBODSYS", "AEDECOD"),
  disp_cols = "AETERM",
  default_formatting = list(all = fmt_config(align = "left"), numeric = fmt_config(align
    = "center")),
  col_formatting = NULL,
  unique_rows = TRUE,
  ...
)

ael01_nollt_pre(
  adam_db,
  dataset = "adae",
  key_cols = c("AEBODSYS", "AEDECOD"),
  disp_cols = "AETERM",
  ...
)

ael01_nollt_post(tlg, ...)

ael01_nollt

Format

An object of class chevron_l of length 1.

Arguments

adam_db: (list of data.frames) object containing the ADaM datasets
dataset: (character) the name of a table in the adam_db object.
key_cols: (character) names of columns that should be treated as key columns when rendering the listing. Key columns allow you to group repeat occurrences.
disp_cols: (character) names of non-key columns which should be displayed when the listing is rendered.
default_formatting: (list) the default format of the listing columns. See rlistings::as_listing.
col_formatting: (list) the format of specific listing columns. See rlistings::as_listing.
unique_rows: (flag) whether to keep only unique rows in listing.
...: additional arguments passed to rlistings::as_listing.
tlg: (TableTree, Listing or ggplot) object typically produced by a main function.

Value

the main function returns an rlistings or a list object.

the preprocessing function returns a list of data.frame.

the postprocessing function returns an rlistings object or an ElementaryTable (null report).

Details

Removes duplicate rows.
By default, uses dataset adae, sorting by key columns AEBODSYS and AEDECOD.
If using with a dataset other than adae, be sure to specify the desired labels for variables in key_cols and disp_cols, and pre-process missing data.

Functions

ael01_nollt_main(): Main TLG function
ael01_nollt_pre(): Preprocessing
ael01_nollt_post(): Postprocessing

Note

adam_db object must contain the dataset table with columns specified by key_cols and disp_cols.

Examples

run(ael01_nollt, syn_data)
#> MedDRA System Organ Class   MedDRA Preferred Term   Reported Term for the Adverse Event
#> ———————————————————————————————————————————————————————————————————————————————————————
#> cl A.1                      dcd A.1.1.1.1           trm A.1.1.1.1                      
#>                             dcd A.1.1.1.2           trm A.1.1.1.2                      
#> cl B.1                      dcd B.1.1.1.1           trm B.1.1.1.1                      
#> cl B.2                      dcd B.2.1.2.1           trm B.2.1.2.1                      
#>                             dcd B.2.2.3.1           trm B.2.2.3.1                      
#> cl C.1                      dcd C.1.1.1.3           trm C.1.1.1.3                      
#> cl C.2                      dcd C.2.1.2.1           trm C.2.1.2.1                      
#> cl D.1                      dcd D.1.1.1.1           trm D.1.1.1.1                      
#>                             dcd D.1.1.4.2           trm D.1.1.4.2                      
#> cl D.2                      dcd D.2.1.5.3           trm D.2.1.5.3