Run the pipeline

Usage

run(
  object,
  adam_db,
  auto_pre = TRUE,
  verbose = FALSE,
  ...,
  user_args = list(...)
)

# S4 method for chevron_tlg
run(
  object,
  adam_db,
  auto_pre = TRUE,
  verbose = FALSE,
  ...,
  user_args = list(...)
)

Arguments

object

(chevron_tlg) input.

adam_db

(list of data.frames) object containing the ADaM datasets

auto_pre

(flag) whether to perform the default pre processing step.

verbose

(flag) whether to print argument information.

...

extra arguments to pass to the pre-processing, main and post-processing functions.

user_args

(list) arguments from ....

Value

an rtables (for chevron_t), rlistings (for chevron_l), grob (for chevron_g) or ElementaryTable

(null report) depending on the class of chevron_tlg object passed as object argument.

Examples

run(mng01, syn_data, auto_pre = TRUE, dataset = "adlb")
#> $`Alanine Aminotransferase Measurement`

#> 
#> $`C-Reactive Protein Measurement`

#> 
#> $`Immunoglobulin A Measurement`

#> 
#> attr(,"class")
#> [1] "gg_list" "list"