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AEL01_NOLLT Listing 1 (Default) Glossary of Preferred Terms and Investigator-Specified Terms.

Source: R/ael01_nollt.R
ael01_nollt.Rd

AEL01_NOLLT Listing 1 (Default) Glossary of Preferred Terms and Investigator-Specified Terms.

Usage

ael01_nollt_main(
  adam_db,
  dataset = "adae",
  key_cols = c("AEBODSYS", "AEDECOD"),
  disp_cols = "AETERM",
  default_formatting = list(all = fmt_config(align = "left"), numeric = fmt_config(align
    = "center")),
  col_formatting = NULL,
  unique_rows = TRUE,
  ...
)

ael01_nollt_pre(
  adam_db,
  dataset = "adae",
  key_cols = c("AEBODSYS", "AEDECOD"),
  disp_cols = "AETERM",
  ...
)

ael01_nollt_post(tlg, ...)

ael01_nollt

Format

An object of class chevron_l of length 1.

Arguments

adam_db

(list of data.frames) object containing the ADaM datasets

dataset

(character) the name of a table in the adam_db object.

key_cols

(character) names of columns that should be treated as key columns when rendering the listing. Key columns allow you to group repeat occurrences.

disp_cols

(character) names of non-key columns which should be displayed when the listing is rendered.

default_formatting

(list) the default format of the listing columns. See rlistings::as_listing.

col_formatting

(list) the format of specific listing columns. See rlistings::as_listing.

unique_rows

(flag) whether to keep only unique rows in listing.

...

additional arguments passed to rlistings::as_listing.

tlg

(TableTree, Listing or ggplot) object typically produced by a main function.

Value

the main function returns an rlistings or a list object.

the preprocessing function returns a list of data.frame.

the postprocessing function returns an rlistings object or an ElementaryTable (null report).

Details

  • Removes duplicate rows.

  • By default, uses dataset adae, sorting by key columns AEBODSYS and AEDECOD.

  • If using with a dataset other than adae, be sure to specify the desired labels for variables in key_cols and disp_cols, and pre-process missing data.

Functions

  • ael01_nollt_main(): Main TLG function

  • ael01_nollt_pre(): Preprocessing

  • ael01_nollt_post(): Postprocessing

Note

  • adam_db object must contain the dataset table with columns specified by key_cols and disp_cols.

Examples

run(ael01_nollt, syn_data)
#> MedDRA System Organ Class   MedDRA Preferred Term   Reported Term for the Adverse Event
#> ———————————————————————————————————————————————————————————————————————————————————————
#> cl A.1                      dcd A.1.1.1.1           trm A.1.1.1.1                      
#>                             dcd A.1.1.1.2           trm A.1.1.1.2                      
#> cl B.1                      dcd B.1.1.1.1           trm B.1.1.1.1                      
#> cl B.2                      dcd B.2.1.2.1           trm B.2.1.2.1                      
#>                             dcd B.2.2.3.1           trm B.2.2.3.1                      
#> cl C.1                      dcd C.1.1.1.3           trm C.1.1.1.3                      
#> cl C.2                      dcd C.2.1.2.1           trm C.2.1.2.1                      
#> cl D.1                      dcd D.1.1.1.1           trm D.1.1.1.1                      
#>                             dcd D.1.1.4.2           trm D.1.1.4.2                      
#> cl D.2                      dcd D.2.1.5.3           trm D.2.1.5.3