Load TealData object from a file
cdisc_data_file.Rd![[Deprecated]](figures/lifecycle-deprecated.svg)
Usage
cdisc_data_file(path, code = get_code(path))Arguments
- path
A (
connection) or a (character)
string giving the pathname of the file or URL to read from. "" indicates the connectionstdin.- code
(
character)
reproducible code to re-create object
Examples
file_example <- tempfile(fileext = ".R")
writeLines(
text = c(
"# code>
ADSL <- teal.data::example_cdisc_data('ADSL')
ADTTE <- teal.data::example_cdisc_data('ADTTE')
cdisc_data(
cdisc_dataset(\"ADSL\", ADSL), cdisc_dataset(\"ADTTE\", ADTTE),
code = \"ADSL <- teal.data::example_cdisc_data('ADSL')
ADTTE <- teal.data::example_cdisc_data('ADTTE')\",
check = FALSE
)
# <code"
),
con = file_example
)
cdisc_data_file(file_example)
#> Warning: `cdisc_data_file()` was deprecated in teal.data 0.1.3.
#> ℹ Please use `teal_data_file()` instead.
#> A TealData object containing 2 TealDataset/TealDatasetConnector object(s) as element(s):
#> --> Element 1:
#> A CDISCTealDataset object containing the following data.frame (400 rows and 55 columns):
#> STUDYID USUBJID SUBJID SITEID AGE AGEU SEX
#> 1 AB12345 AB12345-CHN-3-id-128 id-128 CHN-3 32 YEARS M
#> 2 AB12345 AB12345-CHN-15-id-262 id-262 CHN-15 35 YEARS M
#> 3 AB12345 AB12345-RUS-3-id-378 id-378 RUS-3 30 YEARS F
#> 4 AB12345 AB12345-CHN-11-id-220 id-220 CHN-11 26 YEARS F
#> 5 AB12345 AB12345-CHN-7-id-267 id-267 CHN-7 40 YEARS M
#> 6 AB12345 AB12345-CHN-15-id-201 id-201 CHN-15 49 YEARS M
#> RACE ETHNIC COUNTRY DTHFL INVID
#> 1 ASIAN HISPANIC OR LATINO CHN Y INV ID CHN-3
#> 2 BLACK OR AFRICAN AMERICAN NOT HISPANIC OR LATINO CHN N INV ID CHN-15
#> 3 ASIAN NOT HISPANIC OR LATINO RUS N INV ID RUS-3
#> 4 ASIAN NOT HISPANIC OR LATINO CHN N INV ID CHN-11
#> 5 ASIAN NOT HISPANIC OR LATINO CHN N INV ID CHN-7
#> 6 ASIAN NOT HISPANIC OR LATINO CHN Y INV ID CHN-15
#> INVNAM ARM ARMCD ACTARM ACTARMCD TRT01P
#> 1 Dr. CHN-3 Doe A: Drug X ARM A A: Drug X ARM A A: Drug X
#> 2 Dr. CHN-15 Doe C: Combination ARM C C: Combination ARM C C: Combination
#> 3 Dr. RUS-3 Doe C: Combination ARM C C: Combination ARM C C: Combination
#> 4 Dr. CHN-11 Doe B: Placebo ARM B B: Placebo ARM B B: Placebo
#> 5 Dr. CHN-7 Doe B: Placebo ARM B B: Placebo ARM B B: Placebo
#> 6 Dr. CHN-15 Doe C: Combination ARM C C: Combination ARM C C: Combination
#> TRT01A TRT02P TRT02A REGION1 STRATA1 STRATA2
#> 1 A: Drug X B: Placebo A: Drug X Asia C S2
#> 2 C: Combination B: Placebo C: Combination Asia C S1
#> 3 C: Combination A: Drug X B: Placebo Eurasia A S1
#> 4 B: Placebo B: Placebo B: Placebo Asia B S2
#> 5 B: Placebo C: Combination A: Drug X Asia C S1
#> 6 C: Combination B: Placebo C: Combination Asia C S2
#> BMRKR1 BMRKR2 ITTFL SAFFL BMEASIFL BEP01FL AEWITHFL RANDDT
#> 1 14.424934 MEDIUM Y Y Y Y N 2019-02-22
#> 2 4.055463 LOW Y Y N N Y 2019-02-26
#> 3 2.803240 HIGH Y Y Y N N 2019-02-24
#> 4 10.262734 MEDIUM Y Y Y Y N 2019-02-27
#> 5 6.206763 LOW Y Y N N N 2019-03-01
#> 6 6.906799 MEDIUM Y Y Y N N 2019-03-05
#> TRTSDTM TRTEDTM TRT01SDTM
#> 1 2019-02-24 11:09:25 2022-02-12 04:28:08 2019-02-24 11:09:25
#> 2 2019-02-26 09:05:10 2022-02-26 03:05:10 2019-02-26 09:05:10
#> 3 2019-02-28 03:19:22 2022-02-27 21:19:22 2019-02-28 03:19:22
#> 4 2019-03-01 13:33:19 2022-03-01 07:33:19 2019-03-01 13:33:19
#> 5 2019-03-02 00:09:33 2022-03-01 18:09:33 2019-03-02 00:09:33
#> 6 2019-03-05 15:24:07 2022-02-19 04:06:48 2019-03-05 15:24:07
#> TRT01EDTM TRT02SDTM TRT02EDTM
#> 1 2021-02-11 22:28:08 2021-02-11 22:28:08 2022-02-12 04:28:08
#> 2 2021-02-25 21:05:10 2021-02-25 21:05:10 2022-02-26 03:05:10
#> 3 2021-02-27 15:19:22 2021-02-27 15:19:22 2022-02-27 21:19:22
#> 4 2021-03-01 01:33:19 2021-03-01 01:33:19 2022-03-01 07:33:19
#> 5 2021-03-01 12:09:33 2021-03-01 12:09:33 2022-03-01 18:09:33
#> 6 2021-02-18 22:06:48 2021-02-18 22:06:48 2022-02-19 04:06:48
#> AP01SDTM AP01EDTM AP02SDTM
#> 1 2019-02-24 11:09:25 2021-02-11 22:28:08 2021-02-11 22:28:08
#> 2 2019-02-26 09:05:10 2021-02-25 21:05:10 2021-02-25 21:05:10
#> 3 2019-02-28 03:19:22 2021-02-27 15:19:22 2021-02-27 15:19:22
#> 4 2019-03-01 13:33:19 2021-03-01 01:33:19 2021-03-01 01:33:19
#> 5 2019-03-02 00:09:33 2021-03-01 12:09:33 2021-03-01 12:09:33
#> 6 2019-03-05 15:24:07 2021-02-18 22:06:48 2021-02-18 22:06:48
#> AP02EDTM EOSSTT EOTSTT EOSDT EOSDY DCSREAS
#> 1 2022-02-12 04:28:08 DISCONTINUED DISCONTINUED 2022-02-12 1084 DEATH
#> 2 2022-02-26 03:05:10 COMPLETED COMPLETED 2022-02-26 1096 <NA>
#> 3 2022-02-27 21:19:22 COMPLETED COMPLETED 2022-02-27 1096 <NA>
#> 4 2022-03-01 07:33:19 COMPLETED COMPLETED 2022-03-01 1096 <NA>
#> 5 2022-03-01 18:09:33 COMPLETED COMPLETED 2022-03-01 1096 <NA>
#> 6 2022-02-19 04:06:48 DISCONTINUED DISCONTINUED 2022-02-19 1082 DEATH
#> DTHDT DTHCAUS DTHCAT LDDTHELD LDDTHGR1 LSTALVDT DTHADY
#> 1 2022-03-06 ADVERSE EVENT ADVERSE EVENT 22 <=30 2022-03-06 1105
#> 2 <NA> <NA> <NA> NA <NA> 2022-03-17 NA
#> 3 <NA> <NA> <NA> NA <NA> 2022-03-11 NA
#> 4 <NA> <NA> <NA> NA <NA> 2022-03-26 NA
#> 5 <NA> <NA> <NA> NA <NA> 2022-03-15 NA
#> 6 2022-02-22 ADVERSE EVENT ADVERSE EVENT 3 <=30 2022-02-22 1084
#> ADTHAUT
#> 1 Yes
#> 2 <NA>
#> 3 <NA>
#> 4 <NA>
#> 5 <NA>
#> 6 Yes
#> ...
#> --> Element 2:
#> A CDISCTealDataset object containing the following data.frame (2000 rows and 67 columns):
#> STUDYID USUBJID SUBJID SITEID AGE AGEU SEX
#> 1 AB12345 AB12345-BRA-1-id-105 id-105 BRA-1 38 YEARS M
#> 2 AB12345 AB12345-BRA-1-id-105 id-105 BRA-1 38 YEARS M
#> 3 AB12345 AB12345-BRA-1-id-105 id-105 BRA-1 38 YEARS M
#> 4 AB12345 AB12345-BRA-1-id-105 id-105 BRA-1 38 YEARS M
#> 5 AB12345 AB12345-BRA-1-id-105 id-105 BRA-1 38 YEARS M
#> 6 AB12345 AB12345-BRA-1-id-134 id-134 BRA-1 47 YEARS M
#> RACE ETHNIC COUNTRY DTHFL INVID
#> 1 BLACK OR AFRICAN AMERICAN HISPANIC OR LATINO BRA N INV ID BRA-1
#> 2 BLACK OR AFRICAN AMERICAN HISPANIC OR LATINO BRA N INV ID BRA-1
#> 3 BLACK OR AFRICAN AMERICAN HISPANIC OR LATINO BRA N INV ID BRA-1
#> 4 BLACK OR AFRICAN AMERICAN HISPANIC OR LATINO BRA N INV ID BRA-1
#> 5 BLACK OR AFRICAN AMERICAN HISPANIC OR LATINO BRA N INV ID BRA-1
#> 6 WHITE NOT HISPANIC OR LATINO BRA Y INV ID BRA-1
#> INVNAM ARM ARMCD ACTARM ACTARMCD TRT01P TRT01A
#> 1 Dr. BRA-1 Doe A: Drug X ARM A A: Drug X ARM A A: Drug X A: Drug X
#> 2 Dr. BRA-1 Doe A: Drug X ARM A A: Drug X ARM A A: Drug X A: Drug X
#> 3 Dr. BRA-1 Doe A: Drug X ARM A A: Drug X ARM A A: Drug X A: Drug X
#> 4 Dr. BRA-1 Doe A: Drug X ARM A A: Drug X ARM A A: Drug X A: Drug X
#> 5 Dr. BRA-1 Doe A: Drug X ARM A A: Drug X ARM A A: Drug X A: Drug X
#> 6 Dr. BRA-1 Doe A: Drug X ARM A A: Drug X ARM A A: Drug X A: Drug X
#> TRT02P TRT02A REGION1 STRATA1 STRATA2 BMRKR1 BMRKR2 ITTFL
#> 1 C: Combination A: Drug X South America B S1 4.156914 MEDIUM Y
#> 2 C: Combination A: Drug X South America B S1 4.156914 MEDIUM Y
#> 3 C: Combination A: Drug X South America B S1 4.156914 MEDIUM Y
#> 4 C: Combination A: Drug X South America B S1 4.156914 MEDIUM Y
#> 5 C: Combination A: Drug X South America B S1 4.156914 MEDIUM Y
#> 6 B: Placebo A: Drug X South America B S2 6.462991 LOW Y
#> SAFFL BMEASIFL BEP01FL AEWITHFL RANDDT TRTSDTM
#> 1 Y Y Y N 2020-03-08 2020-03-08 05:39:28
#> 2 Y Y Y N 2020-03-08 2020-03-08 05:39:28
#> 3 Y Y Y N 2020-03-08 2020-03-08 05:39:28
#> 4 Y Y Y N 2020-03-08 2020-03-08 05:39:28
#> 5 Y Y Y N 2020-03-08 2020-03-08 05:39:28
#> 6 Y Y N N 2020-11-03 2020-11-04 04:08:58
#> TRTEDTM TRT01SDTM TRT01EDTM
#> 1 2022-02-14 20:58:26 2020-03-08 05:39:28 2021-02-14 14:58:26
#> 2 2022-02-14 20:58:26 2020-03-08 05:39:28 2021-02-14 14:58:26
#> 3 2022-02-14 20:58:26 2020-03-08 05:39:28 2021-02-14 14:58:26
#> 4 2022-02-14 20:58:26 2020-03-08 05:39:28 2021-02-14 14:58:26
#> 5 2022-02-14 20:58:26 2020-03-08 05:39:28 2021-02-14 14:58:26
#> 6 2022-02-20 03:33:55 2020-11-04 04:08:58 2021-02-19 21:33:55
#> TRT02SDTM TRT02EDTM AP01SDTM
#> 1 2021-02-14 14:58:26 2022-02-14 20:58:26 2020-03-08 05:39:28
#> 2 2021-02-14 14:58:26 2022-02-14 20:58:26 2020-03-08 05:39:28
#> 3 2021-02-14 14:58:26 2022-02-14 20:58:26 2020-03-08 05:39:28
#> 4 2021-02-14 14:58:26 2022-02-14 20:58:26 2020-03-08 05:39:28
#> 5 2021-02-14 14:58:26 2022-02-14 20:58:26 2020-03-08 05:39:28
#> 6 2021-02-19 21:33:55 2022-02-20 03:33:55 2020-11-04 04:08:58
#> AP01EDTM AP02SDTM AP02EDTM EOSSTT
#> 1 2021-02-14 14:58:26 2021-02-14 14:58:26 2022-02-14 20:58:26 DISCONTINUED
#> 2 2021-02-14 14:58:26 2021-02-14 14:58:26 2022-02-14 20:58:26 DISCONTINUED
#> 3 2021-02-14 14:58:26 2021-02-14 14:58:26 2022-02-14 20:58:26 DISCONTINUED
#> 4 2021-02-14 14:58:26 2021-02-14 14:58:26 2022-02-14 20:58:26 DISCONTINUED
#> 5 2021-02-14 14:58:26 2021-02-14 14:58:26 2022-02-14 20:58:26 DISCONTINUED
#> 6 2021-02-19 21:33:55 2021-02-19 21:33:55 2022-02-20 03:33:55 DISCONTINUED
#> EOTSTT EOSDT EOSDY DCSREAS DTHDT DTHCAUS
#> 1 DISCONTINUED 2022-02-14 709 PROTOCOL VIOLATION <NA> <NA>
#> 2 DISCONTINUED 2022-02-14 709 PROTOCOL VIOLATION <NA> <NA>
#> 3 DISCONTINUED 2022-02-14 709 PROTOCOL VIOLATION <NA> <NA>
#> 4 DISCONTINUED 2022-02-14 709 PROTOCOL VIOLATION <NA> <NA>
#> 5 DISCONTINUED 2022-02-14 709 PROTOCOL VIOLATION <NA> <NA>
#> 6 DISCONTINUED 2022-02-20 473 DEATH 2022-03-16 ADVERSE EVENT
#> DTHCAT LDDTHELD LDDTHGR1 LSTALVDT DTHADY ADTHAUT ASEQ TTESEQ
#> 1 <NA> NA <NA> 2022-03-09 NA <NA> 4 4
#> 2 <NA> NA <NA> 2022-03-09 NA <NA> 2 2
#> 3 <NA> NA <NA> 2022-03-09 NA <NA> 3 3
#> 4 <NA> NA <NA> 2022-03-09 NA <NA> 1 1
#> 5 <NA> NA <NA> 2022-03-09 NA <NA> NA NA
#> 6 ADVERSE EVENT 24 <=30 2022-03-16 496 Yes 2 2
#> PARAM PARAMCD AVAL AVALU ADTM
#> 1 Duration of Confirmed Response CRSD 1273.8498 DAYS 2021-05-27 05:39:28
#> 2 Event Free Survival EFS 135.9787 DAYS 2020-09-25 05:39:28
#> 3 Overall Survival OS 1759.8678 DAYS 2020-11-25 05:39:28
#> 4 Progression Free Survival PFS 241.1912 DAYS 2020-03-30 05:39:28
#> 5 Total Number of Exacerbations TNE 1.0000 COUNT <NA>
#> 6 Duration of Confirmed Response CRSD 544.5728 DAYS 2021-10-05 04:08:58
#> ADY CNSR EVNTDESC CNSDTDSC lgTMATRSK
#> 1 445 1 Last Date Known To Be Alive End of AE Reporting Period NA
#> 2 201 0 Death NA
#> 3 262 0 Death NA
#> 4 22 0 Disease Progression NA
#> 5 NA 1 <NA> End of AE Reporting Period -2.802988
#> 6 335 0 Death NA
#> ...